Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8WWi	37889	2025-02-13	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.003	0.72	0.0	0.04	14.25	0.00	2.306	11.78	3.38	2.7	97.3	0.0	0.63	2.31	0.61	0.69	0.56	8803	1143	5	0	0	0	0	logfile
✔	7FiJ	31599	2025-02-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.005	0.82	0.0	0.05	11.53	0.00	2.493	10.22	5.00	14.4	85.6	0.0	-1.32	0.68	0.62	0.56	3.46	3061	561	1	0	0	0	0	logfile
✔	7Xo3	33335	2025-02-10	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.005	0.62	0.0	0.05	16.17	0.00	2.630	1.50	1.89	15.0	85.0	0.0	-1.91	0.39	0.50	0.85	5.72	2598	378	6	0	0	0	0	logfile
✔	7T4N	25681	2025-02-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.50	0.0	0.04	16.44	0.00	2.547	4.01	1.25	1.1	98.9	0.0	1.55	0.23	0.66	0.87	3.54	6476	803	2	0	0	0	0	logfile
✘	8YZD	39690	2025-02-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6436	792	2	0	0	0	0	logfile
✔	7WU9	32824	2025-02-12	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.64	0.0	0.04	15.54	0.00	2.503	6.12	2.73	2.6	97.4	0.0	0.84	0.77	0.69	0.84	2.24	7369	1030	5	0	0	0	0	logfile
✔	9B8X	44361	2025-02-12	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.49	0.0	0.04	12.43	0.00	2.355	3.94	0.54	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.70	7564	993	2	0	2	0	0	logfile
✔	8HK3	34843	2025-02-13	2022-11-24	3.2	2.28	3.11	2.1	0.002	0.42	0.0	0.04	6.31	0.00	2.069	3.40	0.11	0.9	99.1	0.0	-1.02	0.74	0.73	3.34	2.1	0.004	0.61	0.0	0.04	13.68	0.00	2.522	4.61	2.24	3.6	96.4	0.0	0.72	1.22	0.77	0.80	3.28	8746	1135	5	0	0	0	0	logfile
✔	8WWH	37888	2025-02-13	2023-10-25	2.84	3.06	3.01	3.0	0.003	0.42	0.0	0.04	8.13	0.00	2.156	4.75	0.63	1.8	98.2	0.0	0.92	0.64	0.81	3.95	3.0	0.003	0.53	0.0	0.04	13.90	0.00	2.508	6.13	1.79	1.8	98.2	0.0	1.67	0.52	0.62	0.80	3.10	8821	1143	5	0	0	0	0	logfile
✔	8XJM	38401	2025-02-13	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.70	0.00	2.499	5.31	2.64	1.7	98.3	0.0	2.19	0.52	0.68	0.83	3.88	8849	1140	6	0	1	0	0	logfile
✔	8WWL	37892	2025-02-13	2023-10-25	2.78	2.95	2.86	2.9	0.002	0.42	0.0	0.04	8.90	0.00	2.135	5.97	0.83	1.6	98.4	0.0	0.49	0.67	0.81	4.70	2.9	0.004	0.58	0.0	0.04	13.61	0.00	2.556	5.97	2.48	2.0	98.0	0.0	1.13	0.45	0.67	0.81	3.29	8964	1160	6	0	0	0	0	logfile
✔	8K1Z	36806	2025-02-11	2023-07-11	3.41	3.55	3.06	3.6	0.002	0.42	0.0	0.03	13.66	0.00	2.241	4.01	0.00	1.1	98.9	0.0	5.04	0.60	0.77	1.90	3.6	0.003	0.60	0.0	0.04	15.54	0.00	2.525	4.50	2.94	1.7	98.3	0.0	4.98	1.32	0.61	0.81	1.41	4059	484	6	0	11	2	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	8CP6	16778	2025-02-13	2023-03-01	2.45	3.24	2.60	3.1	0.003	0.42	0.0	0.04	9.14	0.00	2.203	5.51	0.46	1.2	98.8	0.0	0.62	0.76	0.84	6.07	3.1	0.002	0.50	0.0	0.04	11.99	0.00	2.480	4.25	1.37	2.0	98.0	0.0	0.62	0.97	0.73	0.81	5.48	8899	1129	3	0	0	0	0	logfile
✔	8FRP	29404	2025-02-12	2023-01-07	3.8	4.05	3.81	4.0	0.002	0.43	0.0	0.04	13.74	0.00	2.290	4.81	0.00	1.9	98.1	0.0	-1.11	0.64	0.74	1.40	4.0	0.003	0.77	0.0	0.05	17.49	0.00	2.455	12.33	4.42	2.1	97.9	0.0	1.05	1.00	0.63	0.83	1.46	7488	934	5	0	21	0	0	logfile
✔	8i4H	35173	2025-02-11	2023-01-19	3.81	3.30	3.92	3.7	0.001	0.43	0.0	0.04	9.23	0.00	2.262	10.14	5.85	7.4	92.6	0.0	-4.65	0.69	0.64	1.02	3.8	0.005	0.92	0.0	0.05	14.55	0.01	2.269	23.17	4.60	14.7	85.3	0.0	-3.17	1.84	0.72	0.69	1.32	6539	833	2	0	0	0	0	logfile
✔	8CQR	16799	2025-02-14	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.002	0.58	0.0	0.04	15.30	0.00	2.265	13.19	2.13	3.8	96.2	0.0	1.13	1.50	0.45	0.66	0.45	9708	618	6	0	0	0	5010	logfile
✔	8FF2	29036	2025-02-11	2022-12-07	2.87	2.65	2.28	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.006	0.71	0.0	0.05	17.24	0.00	2.404	7.43	2.07	4.2	95.8	0.0	-2.97	2.66	0.52	0.82	5.91	5650	380	10	0	0	0	2740	logfile
✔	8Z1E	39724	2025-02-11	2024-04-11	3.12	3.44	3.19	3.4	0.002	0.43	0.0	0.03	14.56	0.00	2.273	4.34	0.44	1.2	98.8	0.0	0.87	0.57	0.82	1.73	3.4	0.003	0.51	0.0	0.04	15.38	0.00	2.473	5.40	3.92	1.6	98.4	0.0	2.39	0.31	0.65	0.86	1.49	6516	834	3	0	0	0	0	logfile
✔	8FF3	29037	2025-02-10	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.47	0.0	0.05	11.47	0.00	2.698	4.58	0.00	0.7	99.3	0.0	-1.94	0.46	0.35	0.72	4.33	2190	150	6	0	0	0	1122	logfile

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