Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E7Z	31005	2025-02-12	2021-02-28	3.2	3.35	2.96	3.4	0.002	0.51	0.0	0.04	13.40	0.00	2.240	9.87	0.00	5.6	94.4	0.0	-0.12	0.63	0.81	1.86	3.4	0.003	0.56	0.0	0.04	15.42	0.00	2.602	6.45	1.29	6.1	93.9	0.0	1.70	0.42	0.53	0.79	1.65	7808	992	4	0	0	0	0	logfile
✔	7XJL	33231	2025-02-12	2022-04-18	3.5	3.88	3.61	3.8	0.002	0.61	0.0	0.04	13.57	0.00	2.168	10.62	0.00	2.4	97.6	0.0	0.78	0.63	0.77	1.72	3.8	0.004	0.73	0.0	0.04	16.10	0.00	2.495	11.82	3.01	3.0	97.0	0.0	0.84	0.47	0.62	0.78	1.49	8527	1137	6	0	0	0	0	logfile
✔	6i52	4410	2025-02-11	2018-11-12	4.7	4.78	—	8.9	0.002	0.57	0.0	0.04	16.56	0.00	2.303	10.11	5.70	11.6	87.5	0.9	-4.07	0.73	0.54	—	8.8	0.004	0.87	0.0	0.05	18.06	0.01	2.400	19.16	0.00	10.4	88.9	0.7	-3.02	3.56	0.76	0.63	—	3856	432	4	20	0	0	0	logfile
✔	6UVA	20906	2025-02-13	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.66	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.002	0.57	0.0	0.04	18.37	0.00	2.602	6.34	2.30	3.7	96.3	0.0	0.35	1.28	0.65	0.78	2.62	9561	1199	7	0	0	0	0	logfile
✔	7WK1	32555	2025-02-14	2022-01-08	3.25	3.54	—	3.6	0.002	0.44	0.0	0.04	8.42	0.00	2.212	6.55	2.94	5.2	94.7	0.1	-4.01	0.65	0.76	1.98	3.5	0.003	0.62	0.0	0.04	13.44	0.00	2.458	9.82	3.03	5.7	94.2	0.1	0.01	0.78	0.71	0.84	1.40	10200	1330	4	0	2	0	0	logfile
✔	7VAF	31839	2025-02-11	2021-08-29	3.11	3.67	—	3.6	0.002	0.56	0.0	0.04	13.38	0.00	2.264	8.84	0.00	7.3	92.7	0.0	0.32	0.63	0.80	2.23	3.6	0.003	0.70	0.0	0.04	15.59	0.00	2.520	10.17	2.50	7.3	92.7	0.0	0.22	0.45	0.56	0.78	2.31	5625	734	3	0	0	0	0	logfile
✔	7S3i	24825	2025-02-12	2021-09-07	2.51	2.95	2.29	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	5.73	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.003	0.52	0.0	0.04	16.30	0.00	2.526	4.24	1.27	1.8	98.2	0.0	1.69	0.92	0.79	0.89	3.71	8094	1023	5	0	0	0	0	logfile
✔	9F0L	50113	2025-02-11	2024-04-17	2.76	3.53	2.77	3.3	0.002	0.43	0.0	0.03	18.24	0.00	2.271	7.78	0.84	0.4	99.6	0.0	3.17	0.87	0.84	2.02	3.3	0.003	0.48	0.0	0.04	18.28	0.00	2.544	5.92	2.52	0.9	99.1	0.0	4.17	0.32	0.83	0.82	1.52	6119	791	1	0	0	0	0	logfile
✔	7R8C	24315	2025-02-12	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.003	0.63	0.0	0.04	15.17	0.00	2.613	7.37	2.04	5.2	94.8	0.0	1.29	0.55	0.71	0.87	2.14	8538	1090	2	0	0	0	0	logfile
✔	8EFE	28081	2025-02-12	2022-09-08	3.8	4.45	3.82	3.8	0.002	0.52	0.0	0.04	14.48	0.00	1.948	8.30	0.52	3.8	96.2	0.0	1.15	0.93	0.82	1.08	3.8	0.004	0.62	0.0	0.04	16.17	0.00	1.922	9.07	1.17	4.5	95.5	0.0	0.69	0.46	0.93	0.84	1.07	7135	886	3	0	2	0	0	logfile
✔	8DVR	27743	2025-02-11	2022-07-29	3.3	3.38	3.19	3.4	0.002	0.46	0.0	0.04	15.72	0.00	2.267	8.74	1.40	4.5	95.5	0.0	-2.25	0.67	0.75	1.81	3.4	0.003	0.60	0.0	0.04	17.32	0.00	2.577	7.55	3.33	6.1	93.9	0.0	0.07	0.55	0.71	0.83	2.14	5601	635	4	21	2	0	0	logfile
✔	8EG0	28108	2025-02-11	2022-09-10	3.53	4.58	3.65	4.0	0.002	0.49	0.0	0.04	17.47	0.00	2.269	7.87	0.00	0.5	99.5	0.0	1.82	0.89	0.83	1.71	4.1	0.002	0.54	0.0	0.04	18.14	0.00	2.281	6.90	0.40	1.4	98.6	0.0	1.57	0.54	0.90	0.84	1.64	6031	584	4	65	0	0	0	logfile
✔	7P1i	13161	2025-02-11	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.4	0.004	1.08	0.0	0.05	15.35	0.00	2.456	20.49	4.07	6.6	93.4	0.0	0.36	0.97	0.57	0.73	0.45	6644	884	2	0	0	0	0	logfile
✔	6VX4	21429	2025-02-14	2020-02-21	3.12	3.57	3.17	3.4	0.002	0.43	0.0	0.04	12.96	0.00	2.173	11.38	0.38	8.1	91.9	0.0	-4.73	0.80	0.73	1.78	3.3	0.006	0.82	0.0	0.05	16.22	0.01	2.360	20.37	3.38	6.6	93.4	0.0	-1.49	1.46	0.84	0.83	2.51	9813	1265	9	0	0	0	0	logfile
✔	8A05	15048	2025-02-10	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.002	0.46	0.0	0.05	14.53	0.00	2.627	2.02	1.20	2.2	97.8	0.0	0.38	0.20	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	7YCi	33740	2025-02-13	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.009	0.74	0.0	0.04	24.66	0.01	1.830	25.93	0.00	0.0	0.0	0.0	—	0.96	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	8D9L	27265	2025-02-11	2022-06-10	4.04	5.24	4.18	4.5	0.002	0.44	0.0	0.03	16.63	0.00	2.250	7.25	0.43	1.8	98.2	0.0	1.09	0.89	0.80	—	4.4	0.004	0.62	0.0	0.04	17.67	0.00	2.184	14.96	0.00	3.9	96.1	0.0	0.20	1.47	0.91	0.84	—	5757	553	4	65	1	0	0	logfile
✔	8D96	27256	2025-02-14	2022-06-09	3.35	4.21	3.32	3.9	0.002	0.58	0.0	0.04	17.81	0.00	1.836	7.87	0.11	2.5	97.3	0.2	2.00	0.89	0.85	1.96	3.8	0.004	0.54	0.0	0.04	17.79	0.00	1.224	4.07	1.79	2.5	97.3	0.2	2.16	0.40	0.91	0.89	1.91	9203	1056	6	30	4	0	0	logfile
✔	6XJB	22205	2025-02-14	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.003	0.63	0.0	0.04	15.50	0.00	2.502	10.56	3.25	7.5	92.5	0.0	-1.55	1.82	0.88	0.85	1.91	10070	1277	1	0	0	0	0	logfile
✔	7WoC	32648	2025-02-11	2022-01-21	3.35	3.49	—	3.4	0.002	0.48	0.0	0.04	9.58	0.00	2.288	6.75	4.60	6.3	93.7	0.0	-4.80	0.72	0.76	2.37	3.4	0.004	0.72	0.0	0.05	15.01	0.00	2.492	9.31	4.21	10.5	89.5	0.0	-2.98	2.05	0.75	0.84	2.41	4746	610	4	0	1	0	0	logfile

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