Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UTS	42548	2025-02-14	2023-10-31	2.7	2.00	2.74	3.3	0.005	0.84	0.0	0.05	18.95	0.01	1.992	5.05	2.56	5.4	93.8	0.8	-0.21	0.62	0.77	2.51	3.2	0.005	0.72	0.0	0.05	17.76	0.01	1.896	9.32	3.50	5.7	94.2	0.1	-0.12	0.73	0.63	0.84	2.13	9748	1227	6	1	3	0	0	logfile
✔	8QTD	18649	2025-02-10	2023-10-12	3.6	3.77	3.60	3.8	0.002	0.49	0.0	0.04	9.32	0.00	2.298	6.23	2.63	4.5	95.5	0.0	0.45	0.56	0.79	3.01	3.8	0.002	0.57	0.0	0.04	13.75	0.00	2.481	6.87	2.34	4.5	95.5	0.0	0.15	0.52	0.55	0.79	2.96	3219	413	3	0	0	0	0	logfile
✔	8TVH	41642	2025-02-11	2023-08-18	3.6	3.64	3.38	3.6	0.012	1.38	0.0	0.08	12.11	0.01	2.491	1.72	0.52	2.3	97.4	0.3	1.54	0.73	0.80	3.73	3.7	0.004	0.64	0.0	0.04	15.77	0.00	2.471	4.07	2.95	2.6	97.4	0.0	2.48	0.61	0.76	0.84	3.05	6744	939	12	0	3	0	0	logfile
✔	9B5K	44215	2025-02-14	2024-03-22	3.16	3.77	3.31	3.6	0.003	0.45	0.0	0.04	9.40	0.00	2.039	1.58	1.33	2.1	97.9	0.0	1.73	0.77	0.81	2.78	3.6	0.002	0.51	0.0	0.04	13.14	0.00	2.076	4.26	2.04	2.0	98.0	0.0	1.65	2.46	0.74	0.78	2.33	10128	1283	6	0	4	0	0	logfile
✔	8E6V	27927	2025-02-11	2022-08-23	3.3	3.56	3.33	3.5	0.004	0.90	0.0	0.05	16.78	0.01	2.240	11.95	0.00	9.8	89.2	1.0	-2.50	0.74	0.81	2.97	3.5	0.003	0.76	0.0	0.05	16.05	0.01	2.410	8.59	2.89	10.8	88.3	0.9	-1.81	0.40	0.75	0.84	2.97	5476	707	2	0	3	0	0	logfile
✔	8UMC	42375	2025-02-12	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.8	0.005	0.68	0.0	0.05	18.01	0.01	2.138	9.76	3.49	2.8	97.2	0.0	0.10	0.38	0.82	0.81	3.19	7198	890	6	0	2	0	0	logfile
✔	8ZC5	39923	2025-02-11	2024-04-28	3.91	4.07	3.86	4.0	0.004	0.76	0.0	0.05	13.55	0.01	2.258	4.88	0.00	4.4	95.6	0.0	-1.55	0.74	0.78	2.73	4.0	0.004	0.67	0.0	0.05	15.17	0.00	2.542	8.74	1.42	4.9	95.1	0.0	-1.24	1.46	0.76	0.80	2.40	6515	830	8	0	2	0	0	logfile
✔	8KF5	37199	2025-02-10	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.003	0.59	0.0	0.06	15.87	0.00	2.658	4.32	0.00	0.0	100.0	0.0	-0.04	0.92	0.38	0.88	8.22	1500	204	6	0	0	0	0	logfile
✔	8VRW	43488	2025-02-14	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.004	0.66	0.0	0.04	13.82	0.01	2.382	11.50	2.00	4.4	95.6	0.0	-0.81	1.14	0.67	0.66	2.41	10413	1272	9	0	0	0	0	logfile
✔	8P1U	17356	2025-02-13	2023-05-12	3.3	3.59	3.29	3.7	0.003	0.56	0.0	0.04	15.31	0.00	2.269	10.25	0.21	4.1	95.9	0.0	0.73	0.63	0.74	1.66	3.6	0.004	0.58	0.0	0.04	16.23	0.00	2.420	8.36	3.26	4.2	95.8	0.0	0.78	0.39	0.59	0.75	1.73	9149	1179	5	0	0	0	0	logfile
✔	8JS9	36617	2025-02-12	2023-06-19	3.01	3.19	—	3.2	0.004	0.55	0.0	0.04	15.24	0.00	2.136	7.19	0.23	3.2	96.8	0.0	0.68	0.62	0.85	3.09	3.2	0.004	0.49	0.0	0.04	15.18	0.00	2.591	5.35	1.82	2.5	97.5	0.0	1.01	0.28	0.60	0.84	2.79	8177	1012	4	0	5	0	0	logfile
✔	8SMN	40594	2025-02-11	2023-04-26	3.2	3.28	3.05	3.3	0.005	0.61	0.0	0.04	17.26	0.00	2.239	4.61	0.15	3.7	96.3	0.0	0.81	0.68	0.85	2.71	3.3	0.004	0.55	0.0	0.04	16.96	0.00	2.531	4.12	3.51	3.9	96.1	0.0	1.18	0.32	0.68	0.86	3.04	6138	749	5	0	9	1	0	logfile
✔	9B8Z	44363	2025-02-12	2024-04-01	3.4	4.06	3.36	3.8	0.004	0.48	0.0	0.03	10.45	0.00	2.014	3.84	0.54	4.2	95.8	0.0	2.44	0.70	0.85	2.22	3.8	0.003	0.56	0.0	0.04	14.36	0.00	2.355	5.66	2.03	2.6	97.4	0.0	2.18	0.53	0.69	0.87	1.92	7509	978	2	0	3	0	0	logfile
✔	8JS8	36616	2025-02-12	2023-06-19	2.88	3.06	—	3.1	0.003	0.61	0.0	0.04	16.36	0.00	2.188	7.56	2.28	3.1	96.9	0.0	0.62	0.62	0.84	2.55	3.1	0.004	0.58	0.0	0.04	16.47	0.00	2.373	5.84	2.96	3.1	96.9	0.0	0.96	0.37	0.61	0.85	2.91	8189	1012	4	0	6	0	0	logfile
✔	8KDT	37145	2025-02-11	2023-08-10	3.04	2.47	3.21	2.2	0.002	0.51	0.0	0.04	8.53	0.00	2.240	7.77	5.91	6.6	93.4	0.0	-4.43	0.67	0.70	1.97	2.2	0.004	0.82	0.0	0.05	14.06	0.00	2.531	12.71	5.55	11.6	88.4	0.0	-2.30	1.47	0.69	0.75	2.21	4837	625	3	0	0	0	0	logfile
✔	8K77	36935	2025-02-12	2023-07-26	3.11	3.30	—	3.4	0.008	0.99	0.0	0.05	16.52	0.00	2.160	9.40	0.00	3.3	96.7	0.0	0.80	0.60	0.79	2.09	3.4	0.003	0.51	0.0	0.04	16.56	0.00	2.492	5.16	2.62	3.0	97.0	0.0	1.14	0.38	0.59	0.81	2.39	8192	1012	4	0	6	0	0	logfile
✔	8TSS	41600	2025-02-13	2023-08-11	3.7	4.10	3.81	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.244	11.94	0.41	4.5	95.5	0.1	0.31	0.67	0.72	0.82	4.1	0.003	0.65	0.0	0.04	16.63	0.00	2.566	8.90	4.81	3.9	96.1	0.0	1.23	1.59	0.66	0.74	0.96	8918	1150	2	0	0	0	0	logfile
✔	9DTT	47165	2025-02-12	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	8T6S	41079	2025-02-14	2023-06-18	3.28	4.03	3.45	3.5	0.006	1.06	0.0	0.06	19.31	0.01	2.217	6.43	0.12	2.5	97.5	0.0	-1.45	0.80	0.77	0.85	3.5	0.003	0.62	0.0	0.04	19.81	0.00	2.531	10.68	2.55	3.1	96.9	0.0	0.04	1.00	0.80	0.77	0.94	10400	962	4	119	0	0	0	logfile
✔	8H8F	34545	2025-02-11	2022-10-22	3.48	4.08	3.87	4.0	0.003	0.69	0.0	0.05	17.03	0.01	2.140	13.54	1.02	3.3	96.7	0.0	-0.20	0.47	0.67	0.99	4.0	0.003	0.67	0.0	0.04	17.99	0.00	2.520	11.49	5.09	3.6	96.4	0.0	-0.69	0.47	0.48	0.69	0.94	6168	753	3	0	0	0	0	logfile

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