Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Q3U	13795	2025-02-10	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.005	0.93	0.0	0.06	18.94	0.00	2.499	19.13	3.81	13.9	86.1	0.0	-6.07	2.25	0.35	0.61	3.36	2355	355	5	0	0	0	0	logfile
✔	7BC5	12139	2025-02-10	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.004	0.81	0.0	0.05	17.27	0.00	2.517	15.24	5.34	7.5	92.5	0.0	-3.13	1.30	0.24	0.59	1.31	1200	161	1	0	0	0	0	logfile
✔	8TiF	41286	2025-02-10	2023-07-19	3.89	3.95	3.71	4.1	0.005	0.55	0.0	0.04	17.04	0.00	2.317	8.78	1.02	1.6	98.4	0.0	0.15	0.23	0.85	1.30	4.1	0.004	0.54	0.0	0.04	17.08	0.00	2.619	4.39	5.10	1.6	98.4	0.0	0.67	0.30	0.22	0.85	3.19	889	131	1	0	0	0	0	logfile
✔	7KU5	23034	2025-02-10	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.003	0.67	0.0	0.05	15.81	0.01	2.630	10.16	1.67	11.6	88.4	0.0	-1.88	1.17	0.24	0.70	2.01	750	88	2	0	4	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	9Eo9	19849	2025-02-10	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.006	0.87	0.0	0.05	15.00	0.00	2.494	4.14	2.94	6.0	94.0	0.0	-2.85	1.24	0.29	0.79	3.58	1190	154	2	0	0	0	0	logfile
✔	8oLG	16957	2025-02-10	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	1.00	0.0	0.06	15.89	0.00	2.594	19.83	0.00	17.8	82.2	0.0	-4.83	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8Q9E	18278	2025-02-11	2023-08-20	2.97	2.51	2.93	2.7	0.011	1.89	2.0	0.11	11.77	0.01	2.528	0.59	1.32	1.9	98.1	0.0	-1.47	0.25	0.73	5.90	2.7	0.003	0.61	0.0	0.05	17.74	0.00	2.490	1.33	0.79	1.7	98.3	0.0	-1.40	1.39	0.34	0.84	4.55	6768	432	6	0	0	0	3456	logfile
✔	8oLQ	16961	2025-02-10	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.7	0.002	0.46	0.0	0.05	14.60	0.00	2.568	3.28	2.40	6.0	94.0	0.0	-1.70	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	8Q9G	18280	2025-02-11	2023-08-20	2.65	1.99	2.52	2.2	0.011	1.95	0.0	0.09	10.25	0.01	2.554	0.00	0.00	1.6	98.4	0.0	-1.98	0.25	0.66	6.26	2.2	0.005	0.66	0.0	0.05	16.87	0.00	2.482	1.61	1.56	2.3	97.7	0.0	-2.27	1.27	0.35	0.84	6.58	6822	438	6	0	0	0	3480	logfile
✔	8ZLo	60231	2025-02-11	2024-05-20	3.1	2.98	2.81	3.3	0.015	1.52	0.0	0.08	17.15	0.01	2.063	28.08	0.00	9.4	90.6	0.0	-4.08	0.25	0.57	3.84	3.1	0.006	0.98	0.0	0.05	14.91	0.00	2.600	9.98	3.95	10.1	89.9	0.0	-4.03	1.95	0.52	0.88	3.30	4816	660	18	0	10	0	0	logfile
✔	7U15	26278	2025-02-11	2022-02-19	3.0	3.14	—	3.3	0.006	1.22	0.0	0.12	17.23	0.01	1.886	12.16	3.44	3.8	96.2	0.0	-6.51	0.26	0.64	1.55	3.2	0.003	0.71	0.0	0.11	15.78	0.00	2.407	10.40	3.97	16.0	84.0	0.0	-5.26	0.91	0.27	0.69	2.87	6684	405	6	0	12	0	3255	logfile
✔	7Yo3	33980	2025-02-13	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.9	0.002	0.55	0.0	0.04	16.35	0.00	2.057	6.51	2.06	2.1	97.9	0.0	0.75	0.77	0.30	0.74	2.35	8961	1144	3	0	3	0	0	logfile
✔	9CGZ	45589	2025-02-12	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.65	0.0	0.05	17.79	0.00	2.481	5.13	1.56	7.7	92.3	0.0	-2.43	0.97	0.39	0.79	5.02	6822	438	6	0	0	0	3480	logfile
✔	6VHL	21207	2025-02-10	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.71	0.00	2.526	4.56	2.24	10.0	90.0	0.0	-3.04	2.68	0.27	0.70	3.78	1190	158	4	0	0	0	0	logfile
✔	9CGX	45588	2025-02-12	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.40	0.00	2.529	3.74	1.28	7.6	92.1	0.2	-2.80	1.38	0.35	0.77	4.81	6960	444	6	0	0	0	3540	logfile
✔	8Q9J	18283	2025-02-11	2023-08-20	2.96	2.81	3.01	2.7	0.011	1.86	0.0	0.09	10.83	0.01	2.532	0.00	0.00	1.2	98.8	0.0	-1.24	0.26	0.75	6.29	2.9	0.003	0.57	0.0	0.05	15.82	0.00	2.485	1.91	1.56	2.3	97.7	0.0	-1.60	1.20	0.31	0.84	5.86	6822	438	6	0	0	0	3480	logfile
✔	7QL4	14063	2025-02-12	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.005	1.25	0.0	0.05	15.04	0.01	2.462	8.77	1.26	2.7	97.3	0.0	-1.94	2.12	0.30	0.74	3.59	7074	456	6	0	0	0	3606	logfile
✔	8Q8Y	18265	2025-02-12	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.003	0.56	0.0	0.05	17.91	0.00	2.410	1.31	2.07	2.1	97.9	0.0	-1.65	1.24	0.35	0.88	5.32	6896	441	6	0	0	0	3521	logfile

• ← previous
• Page 3 of 255
• next →