Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UUZ	42602	2025-02-11	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.8	0.004	0.86	0.0	0.05	16.44	0.00	2.571	27.43	4.78	5.6	94.4	0.0	-2.39	1.28	0.76	0.59	1.07	2258	300	2	0	0	0	0	logfile
✔	8KBX	37086	2025-02-12	2023-08-04	3.23	3.45	3.22	3.4	0.005	1.10	0.0	0.06	13.38	0.01	1.571	9.65	0.00	9.3	90.2	0.4	-3.61	0.49	0.34	2.38	3.4	0.003	0.76	0.0	0.04	13.91	0.00	2.557	7.00	5.59	12.6	87.4	0.0	-4.17	1.09	0.58	0.57	2.52	6827	1190	2	0	0	0	0	logfile
✘	8K18	36788	2025-02-11	2023-07-10	3.68	5.01	5.15	3.7	0.014	1.85	0.0	0.09	13.98	0.03	1.995	12.12	0.85	7.1	92.9	0.0	-1.91	0.53	0.34	1.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	414	3	0	0	0	0	logfile
✔	7Uo0	26636	2025-02-14	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	29.93	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.5	0.004	0.89	0.0	0.04	30.67	0.01	2.128	16.84	3.06	7.3	92.7	0.0	-2.92	5.04	0.83	0.62	1.37	10697	112	4	455	7	0	0	logfile
✔	7URi	26713	2025-02-10	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.7	0.007	1.37	0.0	0.06	28.71	0.01	2.201	19.50	0.00	0.0	0.0	0.0	—	2.07	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	8CTG	26989	2025-02-11	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.98	0.0	0.04	7.47	0.01	2.306	7.41	3.45	15.6	84.1	0.3	-3.14	2.04	0.60	0.43	1.36	5100	1006	4	0	1	0	0	logfile
✔	8ENR	28277	2025-02-11	2022-09-30	3.8	4.03	4.04	4.3	0.004	0.80	0.0	0.05	14.88	0.00	2.204	17.13	0.89	0.7	99.3	0.0	1.04	0.43	0.37	0.94	4.2	0.006	1.00	0.0	0.05	17.54	0.00	2.457	21.66	3.42	11.1	88.9	0.0	-3.05	2.47	0.50	0.49	2.37	6392	888	8	0	0	0	0	logfile
✔	8FEL	29032	2025-02-13	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.030	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.56	0.0	0.04	13.04	0.00	2.425	9.44	0.00	3.8	96.2	0.0	0.17	1.71	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7M3L	23656	2025-02-11	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.003	0.77	0.0	0.04	15.09	0.00	2.465	10.37	1.05	6.9	93.0	0.1	-0.97	3.81	0.46	0.76	1.51	6113	775	3	0	0	0	0	logfile
✔	8UoA	42432	2025-02-10	2023-10-19	3.8	2.62	3.85	2.1	0.009	1.53	0.0	0.08	22.40	0.01	2.349	7.65	0.00	6.6	93.4	0.0	-1.49	0.50	0.38	1.36	2.1	0.004	0.91	0.0	0.05	13.61	0.00	2.346	13.29	2.47	10.9	89.1	0.0	-2.55	1.17	0.64	0.61	2.67	1440	215	5	0	7	0	0	logfile
✔	8YY1	39663	2025-02-13	2024-04-03	3.6	3.97	3.61	3.5	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.60	0.0	0.04	4.46	0.01	2.593	1.77	0.00	5.3	94.7	0.0	2.41	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	7K8D	22728	2025-02-14	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.6	0.004	0.86	0.0	0.05	13.11	0.01	2.477	14.43	0.00	5.0	95.0	0.0	0.57	1.43	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	9DTT	47165	2025-02-12	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	5A63	3061	2025-02-14	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	20.48	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.76	0.0	0.05	17.68	0.00	2.390	10.99	5.25	5.8	94.1	0.2	0.10	2.90	0.62	0.82	1.66	10003	1223	13	0	22	0	0	logfile
✔	8AZS	15770	2025-02-13	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	2.8	0.074	7.47	388.0	0.40	33.42	0.06	1.152	629.53	23.33	39.1	24.5	36.4	-9.07	18.06	0.18	0.16	-0.06	9036	1224	36	0	0	0	0	logfile
✔	6FU8	4319	2025-02-10	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.79	0.0	0.04	15.48	0.00	2.443	12.46	1.39	8.8	90.0	1.2	-2.70	4.01	0.25	0.69	1.62	1364	82	1	0	0	0	711	logfile
✔	8H3U	32828	2025-02-11	2022-10-09	4.7	3.74	—	2.6	0.002	0.56	0.0	0.04	7.77	0.00	2.279	8.94	1.98	5.8	94.1	0.1	-3.28	0.52	0.42	—	2.2	0.003	0.66	0.0	0.05	9.78	0.00	2.468	13.61	0.00	9.4	90.6	0.0	-1.65	0.87	0.53	0.41	—	6383	818	2	0	0	0	0	logfile
✔	8EXP	28658	2025-02-13	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.6	0.003	0.67	0.0	0.04	13.38	0.00	2.356	11.60	0.00	3.5	96.5	0.0	0.71	1.09	0.63	0.69	—	9024	1078	4	0	2	0	0	logfile
✔	7VZF	32227	2025-02-10	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.93	0.0	0.05	19.17	0.00	2.345	10.57	6.74	18.8	81.2	0.0	-4.25	1.85	0.37	0.63	-0.39	2628	363	3	0	0	0	0	logfile
✔	7JGF	22325	2025-02-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.47	0.0	0.04	13.32	0.00	2.404	44.58	0.41	4.8	95.2	0.0	0.96	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile

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