Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HD7	34671	2025-02-13	2022-11-03	3.52	3.99	3.58	3.3	0.003	0.60	0.0	0.03	23.66	0.00	1.927	2.96	0.00	0.0	0.0	0.0	—	0.89	0.77	—	3.3	0.007	0.76	0.0	0.04	23.88	0.01	1.828	13.19	0.00	0.0	0.0	0.0	—	1.49	0.91	0.84	—	8983	0	2	419	28	0	0	logfile
✔	7WB0	32391	2025-02-14	2021-12-15	3.2	3.52	—	3.3	0.003	0.58	0.0	0.03	21.37	0.00	2.136	7.20	0.00	3.3	96.6	0.1	0.54	0.70	0.73	1.78	3.3	0.002	0.54	0.0	0.03	21.72	0.00	2.511	5.11	1.57	3.6	96.3	0.1	0.78	1.05	0.71	0.76	1.31	10096	797	4	175	0	0	0	logfile
✔	7Uo2	26638	2025-02-11	2022-04-12	3.1	3.75	—	3.0	0.002	0.55	0.0	0.03	26.44	0.00	2.033	10.61	2.04	14.5	83.6	1.8	-3.16	0.85	0.73	1.50	2.9	0.006	0.84	0.0	0.04	26.89	0.01	1.878	18.79	3.06	12.7	87.3	0.0	-2.69	0.65	0.87	0.80	1.84	6735	112	3	271	3	0	0	logfile
✔	7XD5	33136	2025-02-13	2022-03-26	2.84	3.32	2.81	3.1	0.003	0.58	0.0	0.03	23.20	0.00	1.864	0.61	0.00	0.0	0.0	0.0	—	0.88	0.86	—	3.1	0.007	0.68	0.0	0.04	23.27	0.00	1.934	4.20	0.00	0.0	0.0	0.0	—	1.36	0.89	0.90	—	8714	0	3	406	30	0	0	logfile
✔	8E2H	27836	2025-02-14	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.59	0.0	0.03	15.76	0.01	2.329	5.50	2.08	1.0	99.0	0.0	2.61	0.94	0.65	0.83	4.00	10412	656	2	0	0	40	5280	logfile
✔	9iRX	60824	2025-02-11	2024-07-16	3.0	3.17	2.86	3.2	0.009	0.58	0.0	0.03	11.28	0.00	2.197	7.04	0.56	2.4	97.6	0.0	2.29	0.65	0.82	3.59	3.2	0.003	0.66	0.0	0.04	15.02	0.00	2.642	8.17	2.22	1.5	98.5	0.0	2.26	0.36	0.61	0.82	2.77	3509	469	2	0	1	0	0	logfile
✔	8SRM	40735	2025-02-11	2023-05-05	4.46	5.07	4.47	4.4	0.003	0.51	0.0	0.03	4.38	0.00	2.233	4.32	0.00	4.0	96.0	0.0	2.57	0.82	0.84	—	4.3	0.005	0.58	0.0	0.04	4.91	0.00	2.443	1.68	0.00	6.4	93.6	0.0	1.00	1.59	0.83	0.86	—	5773	1163	6	0	0	0	0	logfile
✔	8AXB	15698	2025-02-12	2022-08-31	2.87	3.44	2.88	3.1	0.004	0.62	0.0	0.03	23.87	0.01	2.036	18.05	0.53	5.9	94.1	0.0	-0.94	0.79	0.71	1.53	3.1	0.004	0.66	0.0	0.03	23.59	0.00	2.032	15.75	2.91	3.3	96.7	0.0	-0.18	0.55	0.80	0.74	1.07	8383	430	3	230	0	2	0	logfile
✔	7XQG	33395	2025-02-14	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	12.11	0.00	2.030	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.70	0.0	0.04	15.40	0.00	2.486	6.32	3.24	3.0	97.0	0.0	2.48	0.72	0.80	0.86	1.64	10206	1206	12	0	12	0	0	logfile
✔	6XMF	22257	2025-02-12	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	21.16	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.64	0.0	0.04	21.62	0.00	2.519	11.86	3.17	9.6	90.4	0.0	-0.64	0.46	0.71	0.76	2.88	7382	627	3	109	1	0	0	logfile
✔	8CQR	16799	2025-02-14	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.002	0.58	0.0	0.04	15.30	0.00	2.265	13.19	2.13	3.8	96.2	0.0	1.13	1.50	0.45	0.66	0.45	9708	618	6	0	0	0	5010	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	6WFQ	21652	2025-02-11	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.90	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.9	0.004	0.93	0.0	0.04	18.96	0.00	2.402	13.98	2.66	5.6	94.4	0.0	-0.23	0.98	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	7LQi	23487	2025-02-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.86	0.01	2.040	117.72	20.50	25.8	74.2	0.0	-5.05	1.41	0.64	0.85	3.63	8400	800	100	0	0	0	0	logfile
✔	7Y5W	33627	2025-02-13	2022-06-17	3.5	4.54	3.56	3.7	0.003	0.53	0.0	0.03	27.56	0.00	2.102	12.41	0.00	2.0	98.0	0.0	2.53	0.81	0.70	0.94	3.7	0.007	0.87	0.0	0.04	29.06	0.01	2.018	22.89	5.06	2.5	97.5	0.0	1.44	0.94	0.90	0.86	0.98	8811	579	10	202	0	0	0	logfile
✔	8iBY	35349	2025-02-14	2023-02-10	3.47	3.81	3.66	3.7	0.003	0.62	0.0	0.03	23.52	0.01	2.187	11.40	0.00	4.6	95.3	0.1	0.06	0.77	0.76	1.66	3.7	0.002	0.60	0.0	0.04	23.54	0.00	2.196	9.46	3.43	3.8	96.1	0.1	0.34	1.60	0.76	0.77	1.56	10503	793	3	198	1	0	0	logfile
✔	8SC6	40339	2025-02-11	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.50	0.0	0.04	12.64	0.00	2.605	3.57	1.62	0.9	99.1	0.0	3.25	0.46	0.52	0.80	2.15	3479	447	2	0	1	0	0	logfile
✔	8EDL	28035	2025-02-10	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.003	0.59	0.0	0.03	13.42	0.00	2.535	6.09	2.31	2.6	97.4	0.0	3.40	1.12	0.68	0.73	2.60	2470	395	1	0	0	0	0	logfile
✔	8SRP	40737	2025-02-13	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.03	28.52	0.00	2.482	10.13	3.27	7.6	92.4	0.0	-0.44	1.24	0.74	0.72	2.86	9516	849	14	214	0	0	0	logfile
✔	8CoM	16777	2025-02-14	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.54	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.004	0.59	0.0	0.03	28.52	0.00	2.500	7.79	2.93	1.7	98.3	0.0	1.99	0.91	0.70	0.83	1.30	10705	708	10	254	0	0	0	logfile

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