Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YBK	39120	2025-02-14	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	6CoZ	7545	2025-02-10	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.80	0.0	0.04	5.39	0.00	2.616	1.77	0.00	8.0	92.0	0.0	-2.12	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	8SEH	40411	2025-02-11	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.003	0.63	0.0	0.05	16.87	0.00	2.612	6.07	2.03	5.8	94.2	0.0	-2.98	1.28	0.44	0.81	2.61	5570	730	10	0	0	0	0	logfile
✔	7QL0	14059	2025-02-11	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.2	0.004	0.65	0.0	0.05	14.63	0.00	2.421	4.07	1.11	1.0	99.0	0.0	-2.14	1.55	0.41	0.84	6.23	6390	414	6	0	0	0	3258	logfile
✔	7JV2	22491	2025-02-10	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.007	0.89	0.0	0.05	15.37	0.00	2.544	13.08	4.41	8.0	92.0	0.0	-1.54	1.27	0.71	0.78	3.88	2151	282	3	0	0	0	0	logfile
✔	9BBM	44422	2025-02-12	2024-04-06	3.2	3.01	3.08	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.67	0.0	0.05	16.57	0.00	2.378	5.75	1.03	9.5	89.6	0.9	-3.34	1.32	0.35	0.73	4.18	6966	444	6	0	0	0	3558	logfile
✔	8UP1	42442	2025-02-12	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.006	0.83	0.0	0.04	5.82	0.00	2.030	6.29	0.00	8.2	91.5	0.3	0.10	2.24	0.82	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	7ADM	11731	2025-02-14	2020-09-15	3.5	3.77	3.57	3.8	0.013	1.98	3.0	0.11	15.37	0.02	2.582	0.00	0.73	11.9	88.1	0.0	-2.91	0.49	0.70	2.46	3.8	0.003	0.62	0.0	0.04	16.99	0.00	2.288	6.27	1.83	8.3	91.7	0.0	-1.50	1.84	0.49	0.69	2.34	9726	614	1	0	0	0	4799	logfile
✔	9CGX	45588	2025-02-12	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.40	0.00	2.529	3.74	1.28	7.6	92.1	0.2	-2.80	1.38	0.35	0.77	4.81	6960	444	6	0	0	0	3540	logfile
✔	8oT4	17168	2025-02-11	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.004	0.78	0.0	0.05	17.90	0.00	2.602	7.32	1.72	1.4	98.6	0.0	-2.54	1.33	0.60	0.79	3.95	3444	444	12	0	0	0	0	logfile
✔	9CGZ	45589	2025-02-12	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.65	0.0	0.05	17.79	0.00	2.481	5.13	1.56	7.7	92.3	0.0	-2.43	0.97	0.39	0.79	5.02	6822	438	6	0	0	0	3480	logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	8X1i	37996	2025-02-11	2023-11-07	4.0	4.14	2.43	4.1	0.012	1.87	1.0	0.10	15.72	0.01	1.891	0.00	2.93	5.2	94.8	0.0	-2.05	0.41	0.68	—	4.1	0.003	0.68	0.0	0.04	15.07	0.00	1.809	5.93	0.98	5.7	94.3	0.0	-0.18	1.92	0.43	0.77	—	5722	369	2	0	2	0	2840	logfile
✔	7QKi	14043	2025-02-12	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.002	0.58	0.0	0.05	11.92	0.00	2.535	2.12	0.00	3.4	96.6	0.0	-1.93	1.08	0.39	0.80	4.49	7074	456	6	0	0	0	3606	logfile
✔	8XEL	38293	2025-02-14	2023-12-12	2.8	3.35	2.85	10.0	0.012	1.77	5.0	0.10	13.06	0.02	2.551	0.00	0.88	4.4	95.2	0.4	-0.52	0.19	0.01	0.17	2.9	0.004	0.79	0.0	0.05	16.62	0.01	2.224	75.69	4.40	9.0	91.0	0.0	-2.00	1.49	0.34	0.33	0.07	10119	1071	2	0	0	0	1837	logfile
✔	9CZN	46422	2025-02-11	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.006	0.71	0.0	0.06	19.24	0.00	2.613	8.15	1.60	5.2	94.8	0.0	-1.20	3.21	0.56	0.88	5.45	5020	680	20	0	0	0	0	logfile
✔	6WKT	21708	2025-02-10	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.58	0.0	0.03	15.38	0.00	2.571	6.87	0.00	3.8	96.2	0.0	3.81	0.40	0.64	0.76	3.31	3152	424	4	0	0	0	0	logfile
✔	8TTL	41610	2025-02-11	2023-08-14	2.6	2.56	2.61	2.8	0.013	2.14	8.0	0.13	13.17	0.01	2.584	0.00	1.35	7.1	92.0	0.9	-3.09	0.42	0.79	4.83	2.8	0.003	0.65	0.0	0.05	16.05	0.01	2.572	3.47	1.68	6.5	93.5	0.0	-2.42	1.50	0.37	0.88	5.69	5190	351	6	0	0	0	2607	logfile
✔	8oT3	17167	2025-02-10	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.003	0.72	0.0	0.05	16.62	0.00	2.532	7.05	3.17	3.8	96.2	0.0	-3.41	1.86	0.42	0.79	7.11	2460	336	12	0	0	0	0	logfile
✔	8Q7F	18215	2025-02-11	2023-08-16	3.72	2.86	3.58	3.2	0.011	1.88	2.0	0.10	12.87	0.01	2.492	0.00	0.00	1.1	98.9	0.0	-1.74	0.32	0.74	3.87	3.2	0.006	0.77	0.0	0.05	16.12	0.00	2.519	7.65	2.56	1.4	98.6	0.0	-1.90	0.86	0.39	0.81	4.15	3402	450	6	0	0	0	0	logfile

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