Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	8Q9i	18282	2025-02-11	2023-08-20	2.56	2.01	2.38	2.2	0.011	1.80	0.0	0.08	11.44	0.01	2.520	0.00	0.00	3.8	96.2	0.0	-1.34	0.29	0.75	7.51	2.3	0.002	0.56	0.0	0.05	18.04	0.00	2.506	0.29	0.52	0.5	99.5	0.0	-1.55	4.58	0.38	0.86	7.37	3411	219	3	0	0	0	1740	logfile
✔	8XZJ	38798	2025-02-13	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.004	0.65	0.0	0.04	15.14	0.00	2.547	7.97	2.32	2.4	97.5	0.1	0.93	1.18	0.74	0.80	3.12	9106	1162	6	0	0	0	0	logfile
✔	9iND	60703	2025-02-12	2024-07-06	2.88	2.01	2.90	1.9	0.011	1.09	0.0	0.06	11.53	0.01	2.266	5.06	0.26	4.9	95.1	0.0	-3.25	0.76	0.77	5.00	1.9	0.003	0.65	0.0	0.04	13.65	0.00	2.538	7.63	2.34	3.8	96.2	0.0	-0.22	1.22	0.77	0.78	3.96	7644	1010	7	0	9	0	0	logfile
✔	8Q2J	18109	2025-02-11	2023-08-02	2.23	2.02	2.19	2.2	0.011	1.72	0.0	0.08	11.08	0.01	2.490	0.14	0.00	1.8	98.2	0.0	-1.62	0.29	0.75	7.51	2.2	0.004	0.64	0.0	0.05	19.03	0.00	2.468	4.49	1.25	0.9	99.1	0.0	-1.93	2.29	0.43	0.90	7.16	3507	462	6	0	0	0	0	logfile
✔	8XZH	38796	2025-02-13	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.004	0.61	0.0	0.04	16.43	0.00	2.475	5.74	2.65	2.3	97.7	0.0	1.04	0.45	0.78	0.85	4.07	9048	1159	6	0	0	0	0	logfile
✔	8Q9H	18281	2025-02-11	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.003	0.56	0.0	0.05	16.95	0.00	2.455	0.59	0.26	1.9	98.1	0.0	-1.77	1.83	0.41	0.86	6.16	6822	438	6	0	0	0	3480	logfile
✔	8WST	37824	2025-02-12	2023-10-17	2.4	2.03	2.39	2.4	0.002	0.45	1.0	0.04	8.87	0.00	2.158	4.97	0.22	3.1	96.9	0.0	2.41	0.64	0.75	3.44	2.4	0.002	0.56	0.0	0.04	14.80	0.00	2.540	5.09	2.88	3.9	96.0	0.1	1.41	1.44	0.64	0.80	3.70	8286	1055	6	0	0	0	0	logfile
✔	8R4A	18883	2025-02-13	2023-11-13	2.8	2.04	2.70	2.7	0.013	2.16	0.0	0.10	15.07	0.01	2.451	5.51	0.00	6.2	93.8	0.0	-4.27	0.78	0.80	3.91	2.7	0.005	0.84	0.0	0.05	17.14	0.00	2.549	9.76	4.81	4.9	95.1	0.0	-4.32	0.60	0.81	0.86	4.20	9225	1170	9	0	0	0	0	logfile
✔	7P6C	13225	2025-02-12	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.66	0.0	0.05	17.09	0.00	2.451	3.49	2.04	3.5	96.5	0.0	-2.69	0.90	0.44	0.89	7.34	8120	1080	10	0	0	0	0	logfile
✔	7QKL	14046	2025-02-11	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.60	0.0	0.05	17.01	0.00	2.619	2.69	1.01	2.7	97.3	0.0	-1.30	2.05	0.44	0.91	8.00	3468	456	6	0	0	0	0	logfile
✔	7ZGo	14709	2025-02-12	2022-04-04	2.55	2.04	2.53	2.6	0.008	1.24	0.0	0.06	16.94	0.00	2.170	9.40	0.00	3.4	96.6	0.0	1.35	0.50	0.76	3.14	2.5	0.004	0.56	0.0	0.04	16.48	0.00	2.195	8.21	1.71	3.3	96.7	0.0	1.86	1.08	0.53	0.79	3.26	7754	940	6	0	21	24	0	logfile
✔	8R47	18881	2025-02-11	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.30	0.00	2.507	7.33	1.77	3.0	97.0	0.0	-3.99	1.04	0.52	0.82	6.08	3780	498	6	0	0	0	0	logfile
✔	7RNN	24580	2025-02-11	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.96	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.003	0.59	0.0	0.04	15.26	0.00	2.632	3.96	2.19	1.5	98.5	0.0	0.29	0.95	0.49	0.87	3.90	4000	540	3	0	2	0	0	logfile
✔	7UZS	26917	2025-02-14	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.89	0.00	2.443	2.22	1.25	1.2	98.8	0.0	1.38	0.33	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile
✔	8EA0	27970	2025-02-10	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	13.66	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.58	0.0	0.04	14.18	0.00	2.539	6.50	1.68	5.3	94.7	0.0	1.21	0.37	0.74	0.81	2.65	2286	285	2	0	2	0	0	logfile
✔	8J47	35972	2025-02-10	2023-04-19	2.5	2.05	2.32	2.2	0.004	0.74	0.0	0.06	18.27	0.00	2.518	4.26	2.38	9.3	90.7	0.0	-2.51	0.30	0.75	4.89	2.2	0.006	0.95	0.0	0.06	18.04	0.00	2.606	3.78	10.48	11.1	88.9	0.0	-3.26	0.48	0.44	0.86	4.56	2080	290	10	0	0	0	0	logfile
✔	8P2S	17373	2025-02-14	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.005	0.68	0.0	0.05	16.43	0.00	1.989	9.59	1.94	6.2	93.7	0.1	0.14	0.54	0.80	0.79	3.85	9694	1201	4	0	6	0	0	logfile
✔	8FY4	29552	2025-02-12	2023-01-25	2.57	2.06	2.58	2.8	0.003	0.57	0.0	0.04	14.87	0.00	2.189	8.90	1.87	1.8	98.2	0.0	2.42	0.63	0.62	1.36	1.9	0.004	0.62	0.0	0.04	17.35	0.00	2.500	7.82	2.68	2.7	97.3	0.0	1.78	1.15	0.79	0.79	2.72	7800	989	3	0	0	0	0	logfile
✔	8D2Q	27146	2025-02-14	2022-05-30	2.58	2.06	2.50	2.5	0.006	0.97	1.0	0.05	20.82	0.01	2.113	5.23	0.00	3.5	96.5	0.0	-1.68	0.60	0.79	4.32	2.5	0.003	0.63	0.0	0.04	21.05	0.01	2.032	8.81	0.54	2.9	97.1	0.0	0.44	0.37	0.61	0.81	4.05	9721	906	8	122	5	2	0	logfile

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