Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HF7	34715	2025-02-13	2022-11-09	3.8	4.66	1.82	4.2	0.006	1.34	2.0	0.07	14.02	0.01	2.294	7.91	0.61	5.9	93.5	0.6	-3.03	0.63	0.74	0.62	4.3	0.003	0.81	0.0	0.04	16.14	0.00	2.464	12.14	2.13	6.1	93.8	0.2	0.12	0.56	0.64	0.76	0.61	8978	1126	4	0	26	0	0	logfile
✔	7EFD	31084	2025-02-11	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.005	0.80	0.0	0.05	14.80	0.00	2.552	4.70	0.27	3.4	96.0	0.6	0.76	0.56	0.80	0.84	6.40	4004	480	8	0	4	156	0	logfile
✔	7QK5	14038	2025-02-14	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.002	0.56	0.0	0.05	17.92	0.00	2.572	1.62	1.37	3.9	96.1	0.0	-1.92	1.64	0.36	0.82	6.93	10485	666	18	0	36	0	5337	logfile
✔	7oZH	13124	2025-02-11	2021-06-28	3.02	3.20	1.84	3.3	0.024	1.40	0.0	0.09	7.44	0.01	2.546	14.72	0.00	5.4	94.6	0.0	-2.78	0.33	0.60	4.68	3.2	0.003	0.66	0.0	0.05	14.81	0.00	2.569	14.21	5.90	7.7	92.3	0.0	-2.22	1.43	0.40	0.68	0.89	3890	580	10	0	0	0	0	logfile
✔	6Y1A	10669	2025-02-10	2020-02-11	4.2	3.60	1.84	4.3	0.005	1.09	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.006	0.75	0.0	0.04	11.19	0.00	2.030	15.54	0.30	10.9	89.1	0.0	-4.42	1.48	0.57	0.76	—	2960	400	32	0	16	0	0	logfile
✔	7Xo0	33332	2025-02-10	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.004	0.45	0.0	0.05	17.18	0.00	2.579	3.05	1.94	7.2	92.8	0.0	-2.63	0.31	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	8V1N	42886	2025-02-10	2023-11-20	3.0	3.17	1.85	3.5	0.004	0.76	0.0	0.05	19.55	0.00	2.237	14.70	3.21	3.6	96.4	0.0	-3.49	0.38	0.70	3.30	3.6	0.003	0.67	0.0	0.05	20.49	0.00	2.625	8.68	4.49	5.4	93.5	1.2	-2.20	0.45	0.39	0.71	3.18	1440	192	12	0	0	0	0	logfile
✔	7Xo1	33333	2025-02-10	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.004	0.59	0.0	0.05	18.22	0.00	2.616	1.90	2.33	7.2	92.8	0.0	-2.10	0.32	0.44	0.87	5.37	2550	372	6	0	0	0	0	logfile
✔	8oZL	17313	2025-02-11	2023-05-09	3.4	3.28	1.87	3.4	0.012	1.52	0.0	0.10	10.88	0.00	2.574	1.49	0.00	1.2	98.8	0.0	2.33	0.37	0.73	3.42	3.4	0.003	0.51	0.0	0.04	13.79	0.00	2.591	1.56	0.97	0.7	99.3	0.0	2.49	0.42	0.55	0.88	1.86	6675	870	5	0	0	0	0	logfile
✔	7QJW	14024	2025-02-12	2021-12-17	2.81	2.81	1.88	2.9	0.012	2.09	0.0	0.10	11.96	0.01	2.556	0.00	0.00	2.3	96.3	1.4	-1.19	0.34	0.72	5.41	2.8	0.003	0.63	0.0	0.05	15.72	0.00	2.528	2.70	0.76	3.4	96.6	0.0	-1.69	1.49	0.39	0.78	5.19	7032	450	6	0	0	0	3588	logfile
✔	8oRM	17129	2025-02-11	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.77	0.01	2.606	4.77	1.62	1.1	98.7	0.2	1.62	0.21	0.70	0.82	5.76	5341	632	7	0	2	210	0	logfile
✔	7QV5	14167	2025-02-11	2022-01-19	3.0	3.03	1.88	3.0	0.010	0.44	0.0	0.06	9.44	0.00	2.689	1.08	0.00	6.2	93.8	0.0	-2.64	0.46	0.86	7.89	3.1	0.002	0.37	0.0	0.06	12.40	0.00	2.272	0.00	0.00	2.8	97.2	0.0	-2.29	0.87	0.50	0.89	6.84	5562	342	45	0	18	0	2997	logfile
✔	8Q9F	18279	2025-02-11	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	16.14	0.00	2.429	2.04	0.28	2.2	97.8	0.0	-2.19	1.79	0.43	0.85	7.00	6390	414	6	0	0	0	3258	logfile
✔	7P6A	13223	2025-02-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.004	0.67	0.0	0.05	14.23	0.00	2.613	4.40	0.43	4.7	95.3	0.0	-2.63	0.83	0.55	0.90	7.68	4166	540	10	0	0	76	0	logfile
✔	8oWD	17234	2025-02-10	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.003	0.69	0.0	0.05	17.28	0.00	2.647	11.39	5.16	2.1	97.9	0.0	-3.59	0.70	0.46	0.79	5.72	1525	200	5	0	0	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	9JBP	61322	2025-02-10	2024-08-27	3.18	2.96	1.89	3.2	0.003	0.70	0.0	0.05	16.94	0.00	2.424	10.13	0.00	2.6	97.4	0.0	-0.69	0.39	0.69	2.11	3.2	0.004	0.62	0.0	0.05	17.23	0.00	2.531	9.09	8.06	2.6	97.4	0.0	-1.81	1.17	0.32	0.70	2.26	2022	246	12	0	48	0	0	logfile
✔	8oVM	17223	2025-02-10	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.004	0.73	0.0	0.05	14.44	0.00	2.607	9.68	6.43	7.1	92.9	0.0	-3.28	1.51	0.45	0.80	4.49	1360	180	5	0	0	0	0	logfile
✔	8Q8C	18250	2025-02-11	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.003	0.54	0.0	0.05	16.55	0.00	2.587	0.60	0.81	2.2	97.8	0.0	-1.06	1.49	0.39	0.90	7.72	6618	429	6	0	0	0	3372	logfile
✔	8WCC	37438	2025-02-10	2023-09-11	3.04	2.88	1.90	3.2	0.017	2.05	5.0	0.15	16.41	0.02	2.464	8.33	2.87	9.2	90.8	0.0	-3.38	0.84	0.81	2.50	3.2	0.003	0.71	0.0	0.04	16.36	0.00	2.617	6.61	1.91	2.7	97.3	0.0	1.44	1.18	0.81	0.78	2.28	2056	270	2	0	1	0	0	logfile

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