Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P79	17522	2025-02-11	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	8P2S	17373	2025-02-14	2023-05-16	2.4	2.06	2.43	1.8	0.003	0.54	0.0	0.04	12.82	0.00	2.120	8.76	3.01	4.7	95.2	0.1	0.29	0.79	0.75	4.06	1.8	0.005	0.68	0.0	0.05	16.43	0.00	1.989	9.59	1.94	6.2	93.7	0.1	0.14	0.54	0.80	0.79	3.85	9694	1201	4	0	6	0	0	logfile
✔	8VXC	43616	2025-02-13	2024-02-04	2.93	2.24	2.94	1.9	0.003	0.51	0.0	0.04	14.76	0.00	2.206	9.15	0.00	3.2	96.8	0.0	0.25	0.75	0.72	1.60	1.9	0.004	0.65	0.0	0.04	17.44	0.01	2.542	10.81	1.90	4.0	96.0	0.0	0.23	0.60	0.75	0.73	1.77	9390	1139	3	22	0	0	0	logfile
✔	8SYM	40884	2025-02-11	2023-05-25	3.2	2.36	3.28	1.9	0.004	0.54	0.0	0.04	13.67	0.00	2.253	8.35	0.00	1.8	98.2	0.0	1.78	0.77	0.78	2.57	1.9	0.004	0.58	0.0	0.04	16.38	0.00	2.447	8.91	1.40	1.6	98.4	0.0	1.86	0.41	0.78	0.79	2.37	4486	560	2	0	0	0	0	logfile
✔	8oRM	17129	2025-02-11	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.77	0.01	2.606	4.77	1.62	1.1	98.7	0.2	1.62	0.21	0.70	0.82	5.76	5341	632	7	0	2	210	0	logfile
✔	9iND	60703	2025-02-12	2024-07-06	2.88	2.01	2.90	1.9	0.011	1.09	0.0	0.06	11.53	0.01	2.266	5.06	0.26	4.9	95.1	0.0	-3.25	0.76	0.77	5.00	1.9	0.003	0.65	0.0	0.04	13.65	0.00	2.538	7.63	2.34	3.8	96.2	0.0	-0.22	1.22	0.77	0.78	3.96	7644	1010	7	0	9	0	0	logfile
✔	8DZP	27804	2025-02-13	2022-08-08	2.71	2.09	2.70	1.9	0.004	0.68	0.0	0.05	13.62	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.8	0.004	0.58	0.0	0.04	15.45	0.00	2.506	5.08	2.35	4.0	96.0	0.0	0.77	0.95	0.80	0.82	3.60	8657	1120	6	0	1	0	0	logfile
✘	8YZD	39690	2025-02-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6436	792	2	0	0	0	0	logfile
✔	8V1Y	42892	2025-02-13	2023-11-21	2.7	2.29	—	1.9	0.003	0.52	0.0	0.04	12.81	0.00	2.268	5.27	0.00	1.8	98.2	0.0	1.13	0.79	0.85	3.37	1.9	0.003	0.66	0.0	0.04	16.50	0.01	2.344	8.56	2.11	2.1	97.9	0.0	0.93	0.56	0.77	0.81	3.24	8918	1137	6	0	2	0	0	logfile
✔	8XQi	38578	2025-02-11	2024-01-05	3.25	2.17	3.00	1.9	0.004	0.66	0.0	0.04	13.88	0.00	2.204	13.00	0.00	4.1	95.9	0.0	1.08	0.77	0.76	2.64	1.9	0.003	0.59	0.0	0.04	14.70	0.00	2.592	10.75	2.30	3.4	96.6	0.0	1.38	0.34	0.76	0.77	2.35	4842	597	4	0	2	0	0	logfile
✔	8iJ5	35465	2025-02-12	2023-02-26	3.0	2.31	2.97	1.9	0.003	0.61	0.0	0.04	19.84	0.00	2.234	10.86	11.22	9.1	90.8	0.1	-2.39	0.76	0.78	2.60	1.9	0.005	0.71	0.0	0.05	19.10	0.00	2.453	10.49	7.16	10.2	89.8	0.0	-2.09	0.29	0.76	0.79	3.09	6815	878	2	0	0	0	0	logfile
✔	9JSU	61783	2025-02-11	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.55	0.0	0.05	13.91	0.00	2.696	1.25	0.00	2.8	97.2	0.0	-3.10	1.17	0.52	0.92	8.57	4040	264	8	0	0	0	2000	logfile
✔	7SRQ	25401	2025-02-11	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	14.14	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	1.9	0.003	0.69	0.0	0.04	15.32	0.00	2.644	7.91	3.50	2.4	97.6	0.0	2.38	1.00	0.72	0.76	3.49	1960	254	2	0	2	0	0	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8F0J	28758	2025-02-14	2022-11-03	2.0	1.77	1.94	1.9	0.005	0.61	1.0	0.05	15.42	0.00	2.246	4.03	0.40	1.1	98.9	0.0	-1.49	0.53	0.75	5.18	1.9	0.004	0.67	0.0	0.04	17.31	0.00	2.428	5.94	1.32	2.4	97.6	0.0	1.25	0.83	0.55	0.79	5.74	9678	1157	12	0	18	25	0	logfile
✔	9JST	61782	2025-02-11	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	8P6V	17508	2025-02-11	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.003	0.58	0.0	0.04	16.80	0.00	2.579	5.08	1.62	1.5	98.4	0.2	1.76	0.76	0.64	0.77	5.41	5243	630	7	0	2	138	0	logfile
✔	8U65	41944	2025-02-12	2023-09-13	3.01	2.26	3.04	1.9	0.002	0.58	0.0	0.04	18.68	0.00	2.164	12.11	0.36	4.8	95.2	0.0	-0.65	0.71	0.67	1.30	1.9	0.003	0.65	0.0	0.04	18.95	0.01	2.437	10.46	3.14	4.2	95.8	0.0	-0.84	0.74	0.71	0.67	0.93	7636	967	4	0	2	0	0	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile

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