Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M65	23689	2025-02-10	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.86	0.0	0.04	11.94	0.00	2.288	15.03	0.00	14.1	85.9	0.0	-5.57	4.53	0.51	0.71	—	2025	275	15	0	5	0	0	logfile
✔	7YK8	33890	2025-02-10	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.003	0.63	0.0	0.05	16.97	0.00	2.614	7.53	10.26	8.5	91.5	0.0	-2.89	1.14	0.43	0.82	1.95	3108	450	12	0	0	0	0	logfile
✔	6GX5	0077	2025-02-10	2018-06-26	3.2	2.51	2.94	3.2	0.017	1.20	0.0	0.11	16.09	0.01	2.596	5.96	4.94	4.3	95.7	0.0	-3.50	0.85	0.88	5.60	3.2	0.004	0.70	0.0	0.05	18.11	0.00	2.599	5.50	4.12	4.3	95.7	0.0	-2.85	0.55	0.82	0.86	5.37	2133	282	3	0	0	0	0	logfile
✔	7YVM	34132	2025-02-10	2022-08-19	3.5	3.56	3.31	3.6	0.009	1.38	6.0	0.09	13.48	0.01	2.166	28.59	1.57	8.9	90.6	0.5	-4.19	0.55	0.72	1.76	3.6	0.004	0.84	0.0	0.04	15.68	0.00	2.520	7.27	6.92	7.2	92.8	0.0	-1.68	1.17	0.56	0.75	1.53	3126	420	3	0	0	0	0	logfile
✔	6TGN	10499	2025-02-10	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	1.01	0.0	0.05	15.88	0.00	2.547	6.64	4.17	2.3	97.7	0.0	-0.12	1.13	0.53	0.82	0.52	672	88	1	0	0	0	0	logfile
✔	8JT9	36637	2025-02-10	2023-06-21	2.97	1.96	2.94	3.3	0.007	0.76	0.0	0.04	15.91	0.01	2.246	5.16	0.67	0.8	99.2	0.0	2.28	0.56	0.88	2.70	3.3	0.004	0.74	0.0	0.04	15.95	0.01	2.595	5.67	3.01	1.6	98.4	0.0	2.29	0.88	0.55	0.87	2.46	2872	384	2	0	1	0	0	logfile
✔	7V4A	31705	2025-02-10	2021-08-12	3.2	3.19	—	3.3	0.002	0.52	0.0	0.05	14.28	0.00	2.423	8.54	0.00	7.9	92.1	0.0	-5.80	0.42	0.82	3.23	3.2	0.002	0.55	0.0	0.05	16.39	0.00	2.468	3.83	3.03	10.5	89.5	0.0	-3.88	1.59	0.42	0.82	3.48	1653	240	3	0	0	0	0	logfile
✔	7YL7	33903	2025-02-10	2022-07-25	3.3	3.54	3.17	3.5	0.009	0.87	0.0	0.04	14.87	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.004	0.57	0.0	0.04	13.23	0.00	2.567	4.28	1.85	7.7	92.3	0.0	-5.03	0.63	0.45	0.78	5.17	2988	402	12	0	0	0	0	logfile
✔	7YVH	34127	2025-02-10	2022-08-19	3.6	3.83	3.91	3.7	0.006	1.11	2.0	0.06	13.30	0.01	1.941	15.71	1.58	8.7	90.8	0.5	-4.17	0.68	0.74	2.43	3.7	0.004	0.94	0.0	0.05	16.19	0.01	2.184	10.42	4.73	5.1	94.9	0.0	-1.39	1.46	0.70	0.78	2.04	3124	420	3	0	0	0	0	logfile
✔	7DWV	30887	2025-02-10	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.77	0.0	0.05	17.76	0.00	2.493	15.42	19.44	23.6	76.4	0.0	-6.15	1.11	0.40	0.75	2.35	2064	258	6	0	0	0	0	logfile
✔	8W8S	37358	2025-02-10	2023-09-04	3.3	4.07	2.88	3.9	0.007	0.89	0.0	0.05	16.08	0.01	2.310	8.96	1.64	4.0	96.0	0.0	1.56	0.57	0.81	1.74	3.9	0.003	0.59	0.0	0.04	16.47	0.00	2.485	3.28	0.41	2.9	97.1	0.0	2.71	0.30	0.57	0.81	1.86	2265	281	2	0	2	0	0	logfile
✔	7M64	23688	2025-02-10	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.4	0.004	0.93	0.0	0.04	11.89	0.00	2.411	7.63	0.95	4.3	95.7	0.0	-3.88	2.10	0.51	0.74	—	1850	250	20	0	10	0	0	logfile
✔	6PEo	20328	2025-02-10	2019-06-20	3.3	3.52	—	3.6	0.003	0.54	0.0	0.05	13.06	0.01	2.492	10.62	0.00	9.7	90.3	0.0	-1.64	0.41	0.82	3.20	3.6	0.006	0.62	0.0	0.06	15.77	0.00	2.593	8.19	4.89	8.1	91.9	0.0	-2.52	1.62	0.41	0.82	5.25	2205	320	5	0	0	0	0	logfile
✔	7BX7	30235	2025-02-10	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.003	0.55	0.0	0.04	13.99	0.00	2.494	3.18	0.57	5.0	95.0	0.0	-5.24	0.54	0.39	0.77	5.74	1896	270	6	0	0	0	0	logfile
✔	6ZRF	11380	2025-02-10	2020-07-13	3.6	3.66	1.96	3.6	0.010	1.07	0.0	0.04	13.34	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.003	0.67	0.0	0.04	14.52	0.00	2.603	15.77	4.17	8.3	91.7	0.0	-5.87	0.51	0.68	0.80	2.62	2220	300	12	0	0	0	0	logfile
✔	6N37	9339	2025-02-10	2018-11-14	3.8	3.51	—	4.2	0.009	1.42	0.0	0.06	16.98	0.01	2.399	13.15	0.00	14.7	85.3	0.0	-5.92	0.51	0.77	3.18	3.6	0.003	0.79	0.0	0.04	18.40	0.00	2.572	17.73	3.20	12.1	87.9	0.0	-5.16	0.89	0.52	0.77	2.08	2580	360	10	0	0	0	0	logfile
✔	7F29	31428	2025-02-10	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.002	0.59	0.0	0.05	14.58	0.00	2.635	3.40	0.00	10.5	89.5	0.0	-1.94	1.55	0.41	0.84	5.26	1794	222	18	0	18	0	0	logfile
✔	6LRQ	0958	2025-02-10	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	3.6	0.002	0.64	0.0	0.05	14.72	0.00	2.632	6.52	8.15	7.9	92.1	0.0	-2.51	0.79	0.44	0.68	1.51	2628	378	6	0	0	0	0	logfile
✔	7QKG	14041	2025-02-10	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.5	0.003	0.58	0.0	0.05	14.17	0.00	2.630	1.62	0.00	3.8	96.2	0.0	-1.34	0.82	0.35	0.82	3.92	2469	162	3	0	0	0	1278	logfile
✔	8BG9	16027	2025-02-10	2022-10-27	3.5	3.74	2.80	4.2	0.008	1.46	0.0	0.09	14.96	0.01	2.484	12.17	12.50	17.1	80.0	2.9	-5.16	0.38	0.79	4.51	4.1	0.003	0.66	0.0	0.05	16.03	0.00	2.612	4.87	3.57	3.8	96.2	0.0	-3.95	1.00	0.39	0.81	5.05	1692	222	6	0	0	0	0	logfile

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