Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H0P	34413	2025-02-13	2022-09-30	3.15	2.98	3.14	3.2	0.001	0.40	0.0	0.04	7.54	0.00	2.208	5.68	0.10	1.2	98.8	0.0	-2.49	0.52	0.65	1.60	3.2	0.003	0.58	0.0	0.04	13.68	0.00	2.559	8.37	1.73	2.8	97.2	0.0	-0.18	0.78	0.57	0.78	2.63	8932	1137	6	0	0	0	0	logfile
✘	6ZD0	11172	2025-02-12	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7962	1611	6	0	0	0	0	logfile
✔	7BZY	30263	2025-02-11	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.004	0.83	0.0	0.05	5.97	0.00	2.470	6.72	0.00	16.1	83.9	0.0	-2.70	1.16	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	6A6B	6988	2025-02-11	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.004	0.66	0.0	0.05	14.30	0.00	2.615	13.56	8.52	8.5	91.5	0.0	-3.06	2.10	0.52	0.71	2.84	5256	756	12	0	0	0	0	logfile
✔	8CTG	26989	2025-02-11	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.98	0.0	0.04	7.47	0.01	2.306	7.41	3.45	15.6	84.1	0.3	-3.14	2.04	0.60	0.43	1.36	5100	1006	4	0	1	0	0	logfile
✔	8oLQ	16961	2025-02-10	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.7	0.002	0.46	0.0	0.05	14.60	0.00	2.568	3.28	2.40	6.0	94.0	0.0	-1.70	1.58	0.24	0.71	—	2445	160	5	0	0	0	1185	logfile
✔	6D7L	7823	2025-02-13	2018-04-25	4.0	4.10	3.93	3.9	0.004	0.86	0.0	0.05	7.65	0.01	2.273	4.18	0.00	8.5	91.5	0.0	-3.90	0.73	0.72	—	3.9	0.004	0.91	0.0	0.05	15.53	0.00	2.262	12.53	2.07	9.8	90.2	0.0	-0.45	2.99	0.76	0.75	—	9172	1152	4	0	0	0	0	logfile
✔	6MST	9232	2025-02-11	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.004	0.51	0.0	0.04	15.57	0.00	2.625	4.50	1.97	2.4	97.6	0.0	-3.65	1.17	0.67	0.91	6.96	5172	648	12	0	0	0	0	logfile
✔	8Y52	38928	2025-02-12	2024-01-31	2.9	4.04	2.90	3.5	0.004	0.62	2.0	0.04	7.69	0.00	2.056	5.55	0.25	1.5	98.5	0.0	-1.50	0.65	0.74	1.75	3.5	0.008	0.99	1.0	0.05	12.83	0.01	1.843	31.23	1.98	2.2	97.8	0.0	-0.90	3.24	0.67	0.83	1.62	7380	931	5	0	1	0	0	logfile
✔	6CU8	7619	2025-02-10	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.005	0.78	0.0	0.06	12.37	0.00	2.536	12.65	3.55	12.1	87.9	0.0	-3.11	1.75	0.42	0.74	2.67	2880	410	10	0	0	0	0	logfile
✔	8H3U	32828	2025-02-11	2022-10-09	4.7	3.74	—	2.6	0.002	0.56	0.0	0.04	7.77	0.00	2.279	8.94	1.98	5.8	94.1	0.1	-3.28	0.52	0.42	—	2.2	0.003	0.66	0.0	0.05	9.78	0.00	2.468	13.61	0.00	9.4	90.6	0.0	-1.65	0.87	0.53	0.41	—	6383	818	2	0	0	0	0	logfile
✔	8TZV	41770	2025-02-11	2023-08-28	2.8	3.84	3.03	3.4	0.001	0.40	0.0	0.04	7.77	0.00	2.199	6.62	0.47	1.0	99.0	0.0	0.07	0.80	0.73	1.36	3.5	0.003	0.74	0.0	0.05	14.08	0.00	2.567	11.46	1.89	2.8	97.2	0.0	-0.16	3.15	0.82	0.76	1.65	5680	696	4	0	2	0	0	logfile
✘	8YZD	39690	2025-02-11	2024-04-06	3.07	2.88	3.09	1.9	0.002	0.42	0.0	0.04	7.78	0.00	2.299	1.99	1.29	2.2	97.8	0.0	-1.69	0.87	0.87	2.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6436	792	2	0	0	0	0	logfile
✔	7XA3	33086	2025-02-13	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.60	0.0	0.04	13.78	0.00	2.522	6.59	2.57	2.9	97.1	0.0	1.68	1.15	0.77	0.78	2.88	9591	1220	6	0	0	0	0	logfile
✔	7LH3	23335	2025-02-14	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.59	0.0	0.04	10.70	0.00	2.520	8.72	0.00	3.0	97.0	0.0	1.97	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	9iZU	61042	2025-02-12	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	8W22	43737	2025-02-11	2024-02-19	4.0	4.25	3.95	4.2	0.008	1.27	0.0	0.06	8.00	0.00	2.497	0.92	0.00	2.8	96.8	0.3	0.30	0.71	0.74	—	4.2	0.003	0.64	0.0	0.04	12.12	0.00	2.621	2.90	5.56	3.3	96.7	0.0	0.31	0.74	0.73	0.78	—	3750	629	3	0	0	0	0	logfile
✔	7FiJ	31599	2025-02-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.005	0.82	0.0	0.05	11.53	0.00	2.493	10.22	5.00	14.4	85.6	0.0	-1.32	0.68	0.62	0.56	3.46	3061	561	1	0	0	0	0	logfile
✔	8iUK	35724	2025-02-14	2023-03-24	2.67	2.43	2.73	2.8	0.004	0.52	0.0	0.04	8.04	0.00	2.280	5.66	0.37	0.9	99.1	0.0	-0.68	0.51	0.68	1.75	2.5	0.005	0.72	0.0	0.05	16.59	0.00	2.365	6.97	4.24	2.2	97.8	0.0	0.95	1.96	0.62	0.87	3.40	9951	1270	7	0	1	0	0	logfile
✘	8AZ0	15728	2025-02-10	2022-09-05	3.4	3.10	3.36	3.6	0.006	0.74	0.0	0.05	8.05	0.01	2.611	0.94	0.00	7.7	92.3	0.0	-4.46	0.50	0.87	5.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2180	280	20	0	10	0	0	logfile

• ← previous
• Page 3 of 255
• next →