Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5V4S	8632	2025-02-14	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.005	0.68	0.0	0.04	12.89	0.00	2.587	4.09	0.00	3.7	96.3	0.0	2.23	1.03	0.60	0.77	—	10756	1548	4	0	0	0	0	logfile
✔	5V4S	8633	2025-02-14	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.004	0.63	0.0	0.04	10.27	0.00	2.359	10.97	0.00	2.9	97.1	0.0	2.95	0.85	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	5V6P	8637	2025-02-13	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.64	0.0	0.03	12.94	0.00	2.205	8.49	0.00	2.3	97.4	0.4	3.36	1.54	0.42	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	5V7V	8642	2025-02-14	2017-03-20	3.9	3.88	—	3.8	0.011	1.22	1.0	0.07	15.68	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.64	0.0	0.04	15.25	0.00	2.245	11.55	2.84	10.5	89.5	0.0	-0.80	0.99	0.61	0.79	0.64	9919	613	4	0	9	0	4811	logfile
✔	5VAi	8653	2025-02-13	2017-03-27	4.1	4.62	—	4.6	0.008	1.11	0.0	0.05	9.72	0.01	2.049	31.73	0.21	4.4	95.3	0.3	-1.52	0.71	0.70	—	4.6	0.004	0.85	0.0	0.05	13.26	0.00	2.340	19.06	0.00	4.5	95.3	0.2	-0.52	1.08	0.70	0.70	—	9099	1178	6	0	0	0	0	logfile
✔	5VRF	8728	2025-02-11	2017-05-10	4.1	4.21	—	4.1	0.011	1.28	0.0	0.06	10.38	0.01	1.994	8.85	0.00	2.5	97.5	0.0	-4.10	0.82	0.83	—	4.1	0.004	0.74	0.0	0.04	13.16	0.00	1.942	9.87	0.00	1.4	98.6	0.0	1.81	3.40	0.83	0.83	—	4378	564	4	0	8	0	0	logfile
✔	5W81	8782	2025-02-14	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.89	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.004	0.73	0.0	0.04	17.25	0.00	1.896	7.42	2.57	3.1	96.8	0.1	0.20	1.53	0.58	0.82	1.24	9393	1173	2	0	4	0	0	logfile
✘	5X1G	6701	2025-02-10	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	5XLP	6731	2025-02-14	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	16.05	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.1	0.004	0.96	0.0	0.04	16.95	0.01	2.462	15.23	0.00	14.8	85.0	0.2	-3.93	2.39	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	5XWY	6777	2025-02-14	2017-06-30	3.2	3.25	—	3.2	0.008	1.18	1.0	0.06	14.68	0.00	2.263	3.64	0.87	7.6	92.3	0.1	-5.96	0.69	0.78	3.96	3.2	0.003	0.70	0.0	0.04	17.64	0.00	2.557	8.01	2.03	6.8	93.2	0.0	-0.02	1.41	0.76	0.87	3.13	10493	1117	2	51	0	0	0	logfile
✔	5YRN	6842	2025-02-12	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.7	0.005	0.93	0.0	0.05	14.45	0.01	2.395	20.97	0.00	4.2	95.8	0.0	-0.88	2.98	0.64	0.81	—	8280	1044	12	0	0	0	0	logfile
✔	5YUD	6845	2025-02-14	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.62	0.01	1.301	55.14	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.004	0.92	0.0	0.05	14.01	0.00	2.375	17.11	0.00	10.9	88.7	0.5	-2.62	1.15	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	5YW7	6847	2025-02-13	2017-11-29	4.4	4.45	4.13	4.3	0.004	0.71	1.0	0.05	13.43	0.01	2.246	14.02	6.49	4.3	95.7	0.0	-2.58	0.70	0.79	—	4.3	0.003	0.71	0.0	0.04	13.05	0.00	2.545	10.28	0.00	2.7	97.3	0.0	0.75	1.45	0.71	0.79	—	8944	1140	2	0	2	0	0	logfile
✔	5YWD	6853	2025-02-13	2017-11-29	4.2	4.38	4.11	4.2	0.003	0.73	0.0	0.04	14.12	0.00	2.031	12.08	6.20	4.1	95.9	0.0	-1.54	0.62	0.74	—	4.2	0.004	0.80	0.0	0.04	13.34	0.00	1.879	12.52	0.00	4.0	96.0	0.0	0.74	1.83	0.65	0.78	—	8997	1154	2	0	4	0	0	logfile
✔	5Z1F	6875	2025-02-12	2017-12-26	4.8	4.85	4.58	4.8	0.006	0.87	0.0	0.05	13.13	0.01	2.213	25.36	5.04	9.8	89.2	1.0	-4.90	0.60	0.76	—	4.8	0.003	0.79	0.0	0.04	11.53	0.01	2.410	11.64	0.00	6.9	93.1	0.0	-0.13	1.40	0.58	0.77	—	8480	1202	2	0	0	0	0	logfile
✔	6A69	6987	2025-02-12	2018-06-27	4.11	4.21	—	4.1	0.011	1.48	0.0	0.07	11.87	0.01	2.275	7.51	1.81	13.5	86.4	0.1	-4.69	0.61	0.81	—	4.2	0.003	0.78	0.0	0.04	12.49	0.01	2.332	11.07	0.12	8.4	91.4	0.2	-1.29	0.83	0.59	0.79	—	7851	1038	3	0	1	0	0	logfile
✔	6A6B	6988	2025-02-11	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.004	0.66	0.0	0.05	14.30	0.00	2.615	13.56	8.52	8.5	91.5	0.0	-3.06	2.10	0.52	0.71	2.84	5256	756	12	0	0	0	0	logfile
✔	6A7F	6993	2025-02-14	2018-07-03	3.4	3.51	—	3.4	0.014	1.17	0.0	0.06	11.20	0.01	2.271	4.26	0.00	0.0	100.0	0.0	-2.13	0.55	0.84	0.56	3.4	0.004	0.73	0.0	0.05	17.73	0.00	2.431	14.38	2.85	0.4	99.6	0.0	2.09	2.04	0.60	0.87	0.03	10830	1410	30	0	0	0	0	logfile
✔	6AV9	7007	2025-02-13	2017-09-01	3.9	3.83	—	3.8	0.008	1.11	0.0	0.06	12.77	0.01	1.920	32.37	0.33	12.8	86.8	0.4	-4.62	0.58	0.80	2.42	3.8	0.004	0.97	0.0	0.05	16.42	0.01	2.529	17.21	3.58	10.7	89.0	0.4	-1.98	1.30	0.58	0.79	0.91	8673	1101	6	0	3	0	0	logfile
✔	6AVB	7008	2025-02-13	2017-09-01	3.9	3.83	—	3.8	0.009	1.13	3.0	0.06	11.85	0.01	2.072	27.43	0.00	12.9	86.8	0.3	-5.00	0.58	0.79	2.72	3.8	0.005	1.03	0.0	0.05	15.85	0.01	2.480	18.42	3.91	12.2	87.7	0.1	-2.51	1.70	0.58	0.80	1.89	8673	1101	6	0	3	0	0	logfile

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