Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6J6J	0689	2025-02-11	2019-01-15	3.2	3.36	—	3.4	0.011	1.06	0.0	0.06	13.51	0.01	2.291	6.43	0.00	11.1	88.9	0.0	-3.36	0.54	0.69	4.31	3.4	0.004	0.68	0.0	0.04	14.92	0.00	2.446	10.15	8.14	9.0	91.0	0.0	-2.39	1.34	0.68	0.80	4.24	3624	476	12	0	4	12	0	logfile
✔	6J6K	0690	2025-02-11	2019-01-15	3.3	3.61	—	3.8	0.005	1.22	0.0	0.06	12.69	0.00	2.357	5.53	1.16	6.8	90.6	2.6	-4.75	0.75	0.81	5.62	3.8	0.004	0.81	0.0	0.04	14.00	0.00	2.575	7.42	3.49	4.3	94.9	0.9	-2.11	0.61	0.67	0.78	4.10	3548	476	4	0	0	0	0	logfile
✔	6KKR	0701	2025-02-13	2019-07-27	2.9	3.08	—	3.1	0.009	1.12	0.0	0.06	18.50	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.61	0.83	3.04	3.1	0.003	0.60	0.0	0.04	13.85	0.00	2.232	5.35	2.72	2.9	97.1	0.0	1.82	1.22	0.60	0.84	1.94	8416	1074	12	0	24	0	0	logfile
✔	6KKT	0702	2025-02-13	2019-07-27	2.9	3.10	—	3.1	0.011	1.18	0.0	0.07	18.46	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.67	0.85	2.65	3.1	0.004	1.23	0.0	0.05	15.10	0.00	2.166	5.58	3.06	2.7	97.3	0.0	0.97	2.23	0.68	0.87	1.67	8416	1074	12	0	24	0	0	logfile
✔	6KKU	0703	2025-02-13	2019-07-27	3.5	3.59	—	3.6	0.009	1.08	0.0	0.06	18.28	0.01	2.243	2.64	0.00	4.3	95.7	0.0	-3.36	0.60	0.82	3.09	3.6	0.003	0.71	0.0	0.04	13.66	0.00	2.227	5.70	1.47	2.3	97.7	0.0	1.34	0.71	0.61	0.82	1.60	8412	1074	12	0	20	0	0	logfile
✔	6KMF	0724	2025-02-12	2019-07-31	3.6	3.51	—	4.0	0.006	0.90	0.0	0.06	14.66	0.01	2.298	5.31	0.62	13.4	86.6	0.0	-4.41	0.52	0.80	2.69	4.0	0.003	0.67	0.0	0.04	16.21	0.00	2.426	7.02	4.48	8.9	91.1	0.0	-3.04	3.38	0.50	0.78	2.52	7704	1011	4	0	0	0	0	logfile
✔	6KNF	0730	2025-02-12	2019-08-05	2.99	3.24	—	3.2	0.007	0.63	0.0	0.05	15.04	0.00	2.015	7.65	8.82	3.6	96.4	0.0	-2.46	0.83	0.91	4.90	3.2	0.004	0.58	0.0	0.05	15.17	0.00	2.040	4.38	4.66	2.0	98.0	0.0	-0.71	0.92	0.83	0.91	4.41	7749	1002	6	0	6	0	0	logfile
✔	6KNG	0731	2025-02-12	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	3.2	0.004	0.56	0.0	0.05	14.83	0.00	2.061	2.81	2.57	1.5	98.5	0.0	-0.24	0.95	0.82	0.92	3.96	7749	1002	6	0	6	0	0	logfile
✘	6KPF	0744	2025-02-13	2019-08-15	2.9	3.03	—	3.0	0.007	0.91	0.0	0.05	14.93	0.01	2.215	5.40	0.00	4.4	95.4	0.2	-4.46	0.67	0.82	4.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8775	1135	6	0	1	0	0	logfile
✔	6KZo	0791	2025-02-13	2019-09-25	3.3	3.57	—	3.5	0.014	1.41	3.0	0.10	16.98	0.01	2.196	36.78	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.003	0.73	0.0	0.04	16.82	0.00	2.313	6.54	4.56	3.4	96.5	0.1	1.25	1.31	0.58	0.83	2.04	8238	967	2	0	22	0	0	logfile
✔	6KZP	0792	2025-02-13	2019-09-25	3.1	2.67	—	3.0	0.013	1.45	1.0	0.08	16.07	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.004	0.68	0.0	0.04	16.29	0.00	2.374	4.99	2.22	2.9	97.1	0.0	1.44	0.68	0.59	0.83	2.54	8557	1014	2	0	18	0	0	logfile
✔	6L1T	0801	2025-02-12	2019-09-30	3.22	3.42	—	3.4	0.011	0.93	0.0	0.06	14.40	0.00	2.296	12.89	0.00	12.6	87.4	0.0	-5.37	0.49	0.84	2.71	3.4	0.005	0.76	0.0	0.05	16.53	0.00	2.522	7.25	13.09	10.8	89.2	0.0	-4.01	1.40	0.49	0.86	3.54	7010	1000	10	0	0	0	0	logfile
✔	6L1U	0803	2025-02-14	2019-09-30	3.37	3.54	—	3.5	0.011	0.92	0.0	0.06	15.74	0.00	2.138	15.24	0.00	15.8	84.2	0.0	-6.06	0.47	0.83	2.58	3.5	0.005	0.73	0.0	0.05	16.84	0.00	2.414	9.48	9.22	15.7	84.3	0.0	-4.79	1.95	0.47	0.85	2.96	10515	1500	15	0	0	0	0	logfile
✔	6L48	0832	2025-02-11	2019-10-16	3.5	3.71	—	3.7	0.003	0.76	2.0	0.05	12.00	0.01	2.217	10.02	2.45	6.6	93.4	0.0	-3.38	0.64	0.74	1.87	3.7	0.004	1.06	1.0	0.05	15.84	0.01	2.327	10.25	4.89	6.0	94.0	0.0	-0.03	0.67	0.66	0.72	1.53	6528	794	4	0	2	0	0	logfile
✔	6L4S	0833	2025-02-10	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.007	0.82	0.0	0.06	15.11	0.00	2.567	9.85	7.89	10.4	89.6	0.0	-3.87	3.10	0.34	0.74	1.89	2268	330	6	0	0	0	0	logfile
✔	6LBH	0869	2025-02-13	2019-11-14	3.7	3.79	—	3.8	0.006	0.82	0.0	0.05	13.62	0.00	2.079	18.56	0.20	7.7	92.2	0.2	-2.87	0.75	0.83	2.95	3.8	0.003	0.70	0.0	0.04	15.43	0.00	2.489	11.70	3.28	5.6	94.4	0.0	-1.01	0.53	0.73	0.81	1.74	9219	1236	6	0	0	0	0	logfile
✔	6LHT	0897	2025-02-14	2019-12-10	3.67	3.78	—	3.7	0.008	1.15	4.0	0.07	15.82	0.01	1.810	9.60	2.05	6.7	92.7	0.5	-4.42	0.44	0.82	2.88	3.7	0.004	0.78	0.0	0.05	16.72	0.01	2.448	7.95	3.32	9.0	90.8	0.2	-1.53	0.65	0.45	0.83	3.01	10754	1329	12	0	5	0	0	logfile
✔	6Li3	0902	2025-02-12	2019-12-10	3.32	3.48	—	3.8	0.002	0.56	0.0	0.04	13.86	0.00	2.124	7.66	0.00	2.4	97.6	0.0	-2.69	0.55	0.68	0.78	3.6	0.004	0.68	0.0	0.04	16.97	0.00	2.562	7.90	4.52	4.4	95.6	0.0	-0.37	1.33	0.58	0.77	1.69	8289	1045	5	0	0	0	0	logfile
✔	6LLE	0912	2025-02-12	2019-12-23	2.9	3.06	2.85	3.0	0.005	0.63	0.0	0.04	13.04	0.00	2.050	6.54	0.00	2.7	97.3	0.0	-1.87	0.67	0.82	3.28	3.0	0.003	0.57	0.0	0.04	16.68	0.00	2.170	5.78	2.41	2.1	97.9	0.0	0.92	0.43	0.68	0.84	2.70	7916	1020	2	0	4	0	0	logfile
✔	6LLY	0915	2025-02-12	2019-12-24	2.8	2.92	2.72	2.9	0.003	0.60	0.0	0.04	12.24	0.00	2.043	6.20	0.12	3.1	96.9	0.0	-4.03	0.66	0.79	2.62	2.9	0.002	0.56	0.0	0.04	15.59	0.00	2.019	6.46	2.44	3.1	96.9	0.0	1.15	0.48	0.65	0.80	1.79	7774	1006	2	0	2	0	0	logfile

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