Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GRo	34210	2025-02-14	2022-09-02	3.5	3.98	3.66	3.9	0.013	1.67	17.0	0.11	25.25	0.01	1.194	18.95	41.49	16.3	77.1	6.6	-5.21	0.60	0.74	1.94	3.9	0.004	0.87	0.0	0.04	18.71	0.01	2.475	13.81	4.77	11.4	88.3	0.3	-0.57	1.30	0.57	0.81	1.64	10624	1322	2	0	0	0	0	logfile
✔	8XZA	38791	2025-02-11	2024-01-21	4.07	4.37	3.89	4.2	0.007	1.10	1.0	0.06	16.31	0.01	1.212	30.95	0.14	8.0	91.1	0.9	-1.65	0.71	0.72	—	4.2	0.003	0.78	0.0	0.05	14.07	0.00	2.396	17.54	0.00	5.2	94.7	0.1	-0.94	1.30	0.72	0.74	—	6565	790	4	0	9	0	0	logfile
✔	8ZNi	60272	2025-02-11	2024-05-27	3.29	4.18	3.32	3.9	0.004	0.71	0.0	0.21	14.83	0.00	1.220	19.67	0.00	10.4	89.6	0.0	-3.51	0.76	0.59	-0.17	3.9	0.003	0.78	0.0	0.05	15.41	0.00	2.529	11.83	6.34	12.9	87.1	0.0	-3.96	3.19	0.79	0.67	0.73	3585	496	3	0	6	0	0	logfile
✔	3J9E	6240	2025-02-11	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.75	0.0	0.04	17.94	0.00	2.514	7.66	2.97	7.9	91.1	1.0	0.77	1.59	0.73	0.85	3.54	4098	520	1	0	0	0	0	logfile
✔	8XZi	38797	2025-02-13	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.7	0.005	0.72	0.0	0.05	14.90	0.00	2.450	5.64	1.63	3.6	96.4	0.0	1.15	1.09	0.75	0.85	3.42	9041	1149	6	0	1	0	0	logfile
✔	9BXi	45005	2025-02-12	2024-05-22	2.7	2.84	2.60	2.9	0.010	1.61	0.0	0.08	10.28	0.01	1.231	13.85	0.00	6.7	93.3	0.0	-1.83	0.46	0.86	5.10	2.9	0.004	0.56	0.0	0.05	15.93	0.00	2.479	2.93	1.49	6.4	93.6	0.0	-2.06	1.67	0.46	0.89	4.13	7182	462	6	0	0	0	3654	logfile
✔	8C03	16354	2025-02-10	2022-12-15	3.89	4.09	3.71	4.1	0.006	0.67	0.0	0.04	13.12	0.00	1.232	8.74	3.06	2.8	97.2	0.0	2.75	0.56	0.76	1.69	4.1	0.004	0.70	0.0	0.04	16.23	0.00	2.566	12.59	4.46	1.9	98.1	0.0	2.85	1.48	0.56	0.78	1.76	3330	429	2	0	1	0	0	logfile
✔	7C9C	30311	2025-02-12	2020-06-05	3.33	3.44	—	3.4	0.009	1.03	0.0	0.06	19.22	0.00	1.232	5.18	0.79	5.4	94.6	0.0	-5.45	0.54	0.87	4.39	3.4	0.003	0.57	0.0	0.04	18.43	0.01	2.278	4.03	1.45	5.0	95.0	0.0	-1.66	0.62	0.52	0.90	3.00	7452	924	7	9	6	0	0	logfile
✔	8XCN	38248	2025-02-13	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.51	0.01	1.621	13.99	3.50	4.5	95.4	0.1	0.42	1.17	0.74	0.83	2.21	8601	1089	5	0	6	0	0	logfile
✔	7RYQ	24745	2025-02-11	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.8	0.004	0.79	0.0	0.05	13.90	0.01	2.391	16.62	0.00	7.2	92.8	0.0	-0.08	1.21	0.85	0.77	—	4332	527	1	0	0	0	0	logfile
✔	6UZ3	20951	2025-02-14	2019-11-14	3.5	3.88	—	3.8	0.022	1.33	3.0	0.15	20.90	0.01	1.260	32.37	1.05	11.2	88.5	0.4	-3.89	0.42	0.70	1.32	3.8	0.004	0.85	0.0	0.05	17.56	0.00	2.414	16.19	3.69	6.9	93.0	0.1	-0.21	1.25	0.41	0.69	0.62	9446	1126	5	0	25	0	0	logfile
✔	7WBJ	32401	2025-02-13	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.002	0.57	0.0	0.04	16.58	0.00	2.341	8.04	2.47	4.3	95.7	0.0	-0.45	0.39	0.64	0.76	1.71	8989	1146	6	0	0	0	0	logfile
✔	7FJP	31626	2025-02-12	2021-08-04	3.0	3.19	—	3.2	0.006	1.14	1.0	0.07	10.95	0.01	1.270	7.70	0.80	7.0	92.2	0.7	-4.60	0.71	0.81	3.22	3.2	0.003	0.75	0.0	0.04	14.68	0.00	1.993	6.04	2.01	5.4	94.4	0.2	-0.12	1.27	0.69	0.83	2.31	7239	983	2	0	4	0	0	logfile
✔	8SEA	40408	2025-02-14	2023-04-08	3.4	3.67	3.45	3.7	0.005	0.57	0.0	0.04	11.77	0.00	1.270	8.65	3.00	4.0	96.0	0.0	0.54	0.71	0.76	1.96	3.6	0.004	0.63	0.0	0.04	14.55	0.00	2.580	8.65	3.00	4.8	95.2	0.0	0.57	0.39	0.76	0.85	1.59	10208	1299	5	0	1	0	0	logfile
✔	6TAU	10428	2025-02-12	2019-10-30	3.7	2.83	—	3.7	0.006	0.99	0.0	0.06	15.44	0.01	1.283	13.22	0.23	6.5	93.5	0.0	-4.23	0.55	0.75	1.32	3.0	0.004	0.65	0.0	0.04	17.53	0.00	2.497	5.50	2.48	6.5	93.5	0.0	0.41	0.63	0.57	0.77	1.57	8148	984	6	0	0	0	0	logfile
✔	8WM5	37641	2025-02-12	2023-10-03	3.04	3.42	3.11	3.4	0.007	0.77	0.0	0.04	18.60	0.01	1.284	12.25	0.00	4.3	95.6	0.1	1.57	0.66	0.85	2.35	3.4	0.003	0.55	0.0	0.04	16.73	0.00	2.376	9.74	2.39	1.8	98.2	0.0	2.52	0.92	0.58	0.85	2.03	7179	950	4	0	5	0	0	logfile
✔	8GRS	34214	2025-02-11	2022-09-02	3.3	3.91	3.48	3.8	0.016	1.94	6.0	0.13	26.31	0.02	1.285	16.08	44.03	21.3	72.9	5.8	-5.46	0.61	0.72	1.86	3.8	0.004	0.81	0.0	0.04	18.99	0.01	2.373	12.13	7.49	11.9	87.8	0.3	-0.55	1.94	0.47	0.77	1.69	5148	626	2	0	1	0	0	logfile
✔	5YUD	6845	2025-02-14	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.62	0.01	1.301	55.14	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.004	0.92	0.0	0.05	14.01	0.00	2.375	17.11	0.00	10.9	88.7	0.5	-2.62	1.15	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	8Gi1	40059	2025-02-14	2023-03-13	3.65	3.39	3.63	3.8	0.017	1.44	12.0	0.10	11.69	0.01	1.301	10.30	0.86	4.1	95.9	0.0	1.00	0.61	0.69	2.76	3.8	0.003	0.57	0.0	0.04	15.63	0.00	2.325	4.51	2.67	4.6	95.4	0.0	2.41	0.83	0.67	0.78	2.06	9704	1152	8	0	0	0	0	logfile
✔	7D4F	30572	2025-02-14	2020-09-23	2.57	2.76	—	2.7	0.012	0.95	0.0	0.06	13.57	0.01	1.326	6.05	0.76	2.2	97.8	0.0	-2.50	0.73	0.85	3.63	2.8	0.004	0.60	0.0	0.05	15.96	0.01	2.198	4.99	1.91	2.7	97.3	0.0	0.47	0.41	0.75	0.88	3.42	9534	1181	5	0	4	0	0	logfile

• ← previous
• Page 3 of 255
• next →