Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VU8	32126	2025-02-10	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	16.69	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.003	0.67	0.0	0.04	19.67	0.01	2.574	5.65	3.97	3.6	96.4	0.0	-0.98	1.14	0.39	0.77	2.93	1433	170	2	0	1	0	0	logfile
✔	8UoA	42432	2025-02-10	2023-10-19	3.8	2.62	3.85	2.1	0.009	1.53	0.0	0.08	22.40	0.01	2.349	7.65	0.00	6.6	93.4	0.0	-1.49	0.50	0.38	1.36	2.1	0.004	0.91	0.0	0.05	13.61	0.00	2.346	13.29	2.47	10.9	89.1	0.0	-2.55	1.17	0.64	0.61	2.67	1440	215	5	0	7	0	0	logfile
✔	8V1N	42886	2025-02-10	2023-11-20	3.0	3.17	1.85	3.5	0.004	0.76	0.0	0.05	19.55	0.00	2.237	14.70	3.21	3.6	96.4	0.0	-3.49	0.38	0.70	3.30	3.6	0.003	0.67	0.0	0.05	20.49	0.00	2.625	8.68	4.49	5.4	93.5	1.2	-2.20	0.45	0.39	0.71	3.18	1440	192	12	0	0	0	0	logfile
✔	8iHV	35460	2025-02-10	2023-02-23	3.11	3.08	2.87	3.3	0.005	0.73	0.0	0.05	13.40	0.00	2.395	12.57	0.00	23.9	76.1	0.0	-6.37	0.39	0.84	6.17	3.3	0.004	0.74	0.0	0.05	15.43	0.00	2.458	2.44	3.85	18.9	81.1	0.0	-5.02	1.23	0.40	0.86	5.82	1446	207	3	0	0	0	0	logfile
✔	8QN7	18509	2025-02-10	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.52	0.0	0.05	18.43	0.00	2.686	2.83	2.76	6.7	93.3	0.0	-3.32	1.19	0.43	0.92	6.17	1455	190	5	0	0	0	0	logfile
✔	7W3T	32293	2025-02-10	2021-11-26	3.59	2.49	3.54	2.2	0.004	0.73	0.0	0.05	17.98	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.1	0.004	0.65	0.0	0.05	15.33	0.00	2.571	9.30	1.25	7.5	92.5	0.0	-2.72	0.31	0.76	0.76	4.50	1455	176	3	0	7	0	0	logfile
✔	8iY7	35816	2025-02-10	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.39	0.0	0.11	26.65	0.01	2.171	45.45	14.58	41.7	51.4	6.9	-6.71	2.44	0.30	0.58	1.40	1464	216	24	0	0	0	0	logfile
✔	7TPK	26058	2025-02-10	2022-01-25	3.4	3.41	—	3.4	0.011	1.40	1.0	0.08	9.83	0.01	2.528	2.12	0.00	4.7	95.3	0.0	-0.98	0.60	0.72	4.39	3.4	0.002	0.59	0.0	0.04	14.84	0.00	2.541	1.77	1.44	2.1	97.9	0.0	-1.11	1.23	0.64	0.80	2.86	1484	194	2	0	1	0	0	logfile
✔	8iK7	35505	2025-02-10	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.051	2.58	2.0	0.15	19.81	0.01	2.122	72.82	25.83	55.4	42.3	2.4	-7.55	1.61	0.34	0.87	3.76	1488	216	24	0	0	0	0	logfile
✔	8oLG	16957	2025-02-10	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	1.00	0.0	0.06	15.89	0.00	2.594	19.83	0.00	17.8	82.2	0.0	-4.83	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8KF4	37198	2025-02-10	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.48	0.0	0.06	14.12	0.00	2.664	1.33	0.00	0.0	100.0	0.0	-1.06	1.19	0.38	0.91	7.82	1500	204	6	0	0	0	0	logfile
✔	8KEW	37170	2025-02-10	2023-08-13	3.3	2.65	2.55	3.4	0.010	0.84	0.0	0.07	14.46	0.00	2.387	8.30	0.00	3.1	96.9	0.0	-3.87	0.36	0.85	5.24	3.4	0.003	0.61	0.0	0.06	16.68	0.00	2.589	3.98	0.00	2.1	97.9	0.0	-1.23	0.41	0.33	0.83	6.43	1500	204	6	0	0	0	0	logfile
✔	8KF5	37199	2025-02-10	2023-08-15	3.4	3.42	3.08	3.6	0.009	0.83	0.0	0.08	15.44	0.00	2.343	20.58	8.00	3.1	96.9	0.0	-3.84	0.38	0.87	7.61	3.5	0.003	0.59	0.0	0.06	15.87	0.00	2.658	4.32	0.00	0.0	100.0	0.0	-0.04	0.92	0.38	0.88	8.22	1500	204	6	0	0	0	0	logfile
✔	8JGC	36230	2025-02-10	2023-05-20	3.44	3.77	3.05	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.005	0.66	0.0	0.05	16.01	0.01	2.602	5.17	1.86	6.0	94.0	0.0	-0.69	0.98	0.54	0.78	2.99	1516	202	1	0	0	0	0	logfile
✔	8JGA	36228	2025-02-10	2023-05-20	3.68	3.83	3.25	3.8	0.005	0.81	0.0	0.05	14.34	0.01	2.230	16.80	1.24	7.0	92.5	0.5	-2.18	0.58	0.81	2.54	3.8	0.003	0.71	0.0	0.05	16.30	0.00	2.639	9.37	2.48	4.5	95.5	0.0	-1.11	0.44	0.57	0.80	2.22	1516	202	1	0	0	0	0	logfile
✔	6R23	4708	2025-02-10	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.65	0.0	0.04	16.48	0.00	2.600	7.52	0.00	7.9	92.1	0.0	0.50	3.42	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	8oWD	17234	2025-02-10	2023-04-27	3.28	3.36	1.89	3.4	0.012	2.44	0.0	0.12	21.08	0.00	2.506	5.03	16.13	0.0	100.0	0.0	-0.81	0.49	0.81	4.66	3.4	0.003	0.69	0.0	0.05	17.28	0.00	2.647	11.39	5.16	2.1	97.9	0.0	-3.59	0.70	0.46	0.79	5.72	1525	200	5	0	0	0	0	logfile
✔	8iHU	35459	2025-02-10	2023-02-23	2.97	2.96	2.80	3.2	0.005	0.72	0.0	0.05	12.54	0.00	2.039	9.90	0.00	20.0	80.0	0.0	-5.66	0.42	0.86	5.85	3.1	0.003	0.71	0.0	0.05	15.51	0.00	2.593	6.27	2.42	16.2	83.8	0.0	-4.28	1.02	0.43	0.90	5.46	1527	216	3	0	0	0	0	logfile
✔	8UPY	42457	2025-02-10	2023-10-23	2.8	3.43	3.00	2.9	0.012	1.65	0.0	0.12	28.73	0.01	1.040	88.62	0.00	0.0	0.0	0.0	—	0.18	0.52	—	2.9	0.006	0.78	0.0	0.04	27.61	0.01	2.038	25.14	0.00	0.0	0.0	0.0	—	1.07	0.22	0.75	—	1532	0	1	72	0	0	0	logfile

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