Table showing results for February 2025

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JGG	22326	2025-02-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.49	0.0	0.03	12.90	0.00	2.246	73.58	0.00	4.5	95.5	0.0	1.76	1.71	0.67	0.70	—	4210	506	1	0	0	0	28	logfile
✔	8DQK	27655	2025-02-11	2022-07-19	4.0	4.35	4.38	3.9	0.003	0.72	0.0	0.05	12.56	0.01	2.134	12.28	0.00	2.6	97.2	0.1	0.14	0.55	0.56	—	4.1	0.003	0.72	0.0	0.04	15.57	0.00	2.582	14.67	3.02	4.6	95.3	0.1	0.11	1.72	0.59	0.69	—	5891	733	1	0	0	0	0	logfile
✔	7QFP	13946	2025-02-14	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.1	0.004	1.03	1.0	0.05	16.88	0.00	1.864	13.91	3.61	12.4	87.6	0.0	-3.18	0.77	0.85	0.76	0.63	9996	1233	1	0	0	0	0	logfile
✔	7RSQ	24677	2025-02-11	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.50	0.0	0.03	15.33	0.00	2.526	1.75	0.48	0.9	99.1	0.0	2.96	1.75	0.63	0.70	1.54	3970	246	1	0	0	0	1958	logfile
✔	7QFQ	13947	2025-02-14	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.003	0.55	0.0	0.04	14.76	0.00	2.340	6.51	1.09	5.4	94.6	0.0	-0.82	0.38	0.67	0.72	1.36	10659	1291	1	0	0	0	0	logfile
✔	7S8U	24922	2025-02-11	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.003	0.83	0.0	0.05	16.77	0.00	2.535	14.25	4.56	8.6	91.3	0.2	-0.39	1.35	0.50	0.61	0.59	5210	667	1	0	0	0	0	logfile
✔	7FiL	31602	2025-02-11	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	3.5	0.003	0.74	0.0	0.04	18.84	0.00	2.508	8.60	4.84	6.0	93.8	0.2	1.45	1.55	0.71	0.76	0.67	3993	504	1	0	0	0	0	logfile
✔	7WHN	32505	2025-02-13	2021-12-31	3.3	2.99	—	3.2	0.009	0.80	0.0	0.05	13.81	0.01	2.147	7.64	0.10	4.5	95.5	0.0	-1.29	0.41	0.83	2.92	3.2	0.002	0.49	0.0	0.04	15.33	0.00	2.535	4.71	0.77	2.1	97.9	0.0	0.84	0.34	0.37	0.81	2.47	9284	1170	1	0	0	0	0	logfile
✔	6LR0	31583	2025-02-14	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.78	0.0	0.04	15.79	0.00	2.519	8.38	2.24	7.3	92.7	0.0	-3.98	0.81	0.65	0.75	1.15	9576	1230	1	0	0	0	0	logfile
✔	7XSN	33428	2025-02-12	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.008	0.71	0.0	0.04	24.73	0.01	2.105	20.74	0.00	0.0	0.0	0.0	—	0.37	0.92	0.86	—	8279	0	1	387	0	0	0	logfile
✔	7oTi	13060	2025-02-13	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.004	0.92	0.0	0.05	14.38	0.01	2.417	21.71	0.00	7.9	91.8	0.3	-1.88	1.77	0.53	0.53	—	9171	1182	1	0	0	0	0	logfile
✔	7NNH	12477	2025-02-11	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.004	1.08	0.0	0.05	16.98	0.01	2.517	24.36	3.06	20.2	79.7	0.2	-2.76	1.13	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	7UVK	26812	2025-02-14	2022-05-02	3.28	3.22	3.00	3.3	0.005	0.74	0.0	0.05	13.60	0.00	2.168	11.01	0.00	9.0	91.0	0.0	-3.16	0.57	0.78	2.35	3.2	0.004	0.69	0.0	0.05	16.37	0.00	2.508	9.51	3.57	9.7	90.3	0.0	-2.42	0.72	0.71	0.88	2.97	10350	1295	1	0	0	0	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	6XoU	22280	2025-02-12	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.13	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.004	0.83	0.0	0.04	14.92	0.00	2.443	11.99	1.05	2.5	97.5	0.0	1.12	1.78	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✘	7B6E	12053	2025-02-10	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2205	269	1	0	0	0	0	logfile
✔	7V22	31634	2025-02-10	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.005	0.69	0.0	0.05	15.74	0.00	2.600	12.95	1.84	12.1	87.5	0.4	-2.43	0.56	0.53	0.80	3.65	1958	240	1	0	0	0	0	logfile
✔	7FJM	31623	2025-02-12	2021-08-04	3.3	3.57	—	3.5	0.014	1.57	16.0	0.12	11.98	0.01	2.194	5.81	3.44	9.2	90.3	0.5	-4.28	0.65	0.76	2.17	3.5	0.003	0.72	0.0	0.04	14.23	0.01	2.465	6.24	3.85	7.3	92.4	0.3	-1.23	1.69	0.66	0.82	1.26	7086	973	1	0	0	0	0	logfile
✔	6XoS	22278	2025-02-12	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	2.95	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.003	0.73	0.0	0.04	14.56	0.00	2.477	7.07	0.47	1.9	98.1	0.0	1.58	0.98	0.89	0.85	1.86	7704	966	1	0	0	0	0	logfile
✔	7SAM	24952	2025-02-11	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.87	0.0	0.04	28.10	0.01	1.833	65.98	0.00	0.0	0.0	0.0	—	5.47	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile

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