Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UQi	42469	2025-02-12	2023-10-23	4.5	7.64	4.73	6.8	0.003	0.84	0.0	0.04	13.62	0.01	2.118	24.94	0.13	7.6	92.4	0.0	-1.83	0.90	0.79	—	6.9	0.004	0.95	0.0	0.05	14.18	0.01	2.235	20.86	0.00	5.3	93.8	0.8	-0.43	3.91	0.85	0.63	—	7318	962	2	0	0	0	0	logfile
✔	7SHS	25135	2025-02-12	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	4.1	0.002	0.59	0.0	0.04	14.36	0.00	2.430	10.26	0.00	2.0	98.0	0.0	2.09	1.87	0.61	0.74	—	6873	849	3	0	0	0	0	logfile
✔	5MSH	3565	2025-02-11	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.75	0.0	0.05	12.36	0.01	2.560	12.89	0.00	5.9	93.9	0.2	-0.94	1.92	0.04	0.14	—	4287	551	2	0	0	0	0	logfile
✔	6JND	9848	2025-02-10	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.003	0.62	0.0	0.04	16.09	0.00	2.520	5.00	2.35	3.4	96.6	0.0	-0.90	1.25	0.48	0.87	1.95	3294	419	2	0	1	0	0	logfile
✔	8D3Y	27168	2025-02-14	2022-06-01	3.9	3.70	3.84	3.7	0.007	0.81	0.0	0.04	17.34	0.01	2.198	10.16	0.19	6.7	93.3	0.0	-0.14	0.60	0.81	1.42	3.7	0.005	0.69	0.0	0.04	17.79	0.00	2.506	8.68	5.51	6.4	93.5	0.1	-0.03	0.36	0.60	0.82	1.16	9898	1298	3	0	0	0	0	logfile
✔	6UKT	20812	2025-02-13	2019-10-05	3.87	4.71	—	4.3	0.007	1.03	0.0	0.06	16.89	0.01	2.247	10.29	0.46	15.8	84.2	0.0	-5.03	0.89	0.80	0.36	4.3	0.003	0.73	0.0	0.04	17.54	0.00	2.394	10.17	1.72	10.2	89.8	0.0	-2.32	0.56	0.90	0.84	0.46	8979	1204	6	0	0	0	0	logfile
✔	8DMo	27545	2025-02-13	2022-07-08	3.9	5.15	3.90	4.1	0.003	0.63	0.0	0.04	14.36	0.00	2.239	9.02	0.00	3.0	96.9	0.1	1.78	0.74	0.67	0.80	4.2	0.003	0.69	0.0	0.04	16.02	0.00	2.552	9.96	0.92	2.6	97.3	0.1	1.97	0.60	0.86	0.87	0.86	8912	1150	2	0	0	0	0	logfile
✔	7URE	26710	2025-02-11	2022-04-21	3.19	3.51	3.25	3.4	0.017	0.78	0.0	0.78	25.75	0.00	2.118	9.65	0.00	5.7	94.3	0.0	-2.27	0.60	0.85	3.70	3.4	0.003	1.11	0.0	0.12	20.09	0.00	2.416	4.92	1.72	4.7	95.3	0.0	0.98	0.92	0.62	0.87	3.15	5450	678	6	0	3	0	0	logfile
✔	7RXC	24728	2025-02-14	2021-08-22	3.2	2.84	—	3.2	0.006	0.78	0.0	0.04	14.27	0.01	2.089	9.58	0.00	2.3	97.7	0.0	1.18	0.66	0.79	2.95	3.2	0.004	0.57	0.0	0.04	15.77	0.00	2.413	7.59	1.50	2.8	97.2	0.0	1.45	0.35	0.63	0.81	2.64	9360	1178	7	0	6	0	0	logfile
✔	8H8A	34540	2025-02-12	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.006	0.79	0.0	0.05	16.02	0.00	2.363	5.54	3.11	14.2	85.7	0.1	-2.74	1.16	0.77	0.90	4.18	8454	1039	2	0	0	0	0	logfile
✔	8CGH	16643	2025-02-10	2023-02-04	2.68	2.73	2.52	2.7	0.011	1.54	0.0	0.08	16.67	0.01	2.629	3.30	0.00	5.1	92.3	2.6	-5.57	0.54	0.94	7.81	2.7	0.005	0.92	0.0	0.05	17.11	0.00	2.632	0.97	0.40	5.4	94.6	0.0	-4.91	0.92	0.53	0.93	6.74	2710	400	5	0	0	0	0	logfile
✔	8BW0	16279	2025-02-11	2022-12-06	3.11	3.43	3.06	3.4	0.005	0.76	0.0	0.05	19.99	0.01	2.189	10.70	0.00	5.1	94.9	0.0	0.61	0.75	0.72	1.84	3.4	0.003	0.83	0.0	0.05	14.77	0.01	2.387	11.17	2.65	5.6	94.4	0.0	0.20	0.51	0.78	0.77	2.13	3201	398	7	0	13	0	0	logfile
✔	7DUQ	30866	2025-02-14	2021-01-11	2.5	2.82	—	2.8	0.006	0.82	0.0	0.06	13.62	0.00	2.126	10.72	0.30	2.3	97.7	0.0	-0.86	0.66	0.78	3.15	2.8	0.004	0.59	0.0	0.04	15.64	0.00	2.494	8.21	2.17	2.6	97.4	0.0	1.12	1.57	0.57	0.77	2.37	9602	1174	7	0	8	0	0	logfile
✔	7UAE	26422	2025-02-11	2022-03-12	2.6	2.71	2.62	2.3	0.012	1.76	2.0	0.10	16.44	0.02	2.282	0.11	0.00	3.9	96.1	0.0	-0.18	0.66	0.87	6.01	2.3	0.004	0.71	0.0	0.05	14.74	0.00	2.150	5.14	1.68	5.3	94.7	0.0	0.27	1.64	0.68	0.89	4.28	4513	535	7	0	18	0	0	logfile
✔	7SCG	25034	2025-02-13	2021-09-28	3.0	3.41	—	3.3	0.005	0.61	0.0	0.04	12.87	0.00	2.274	9.34	0.00	4.4	95.6	0.0	-0.30	0.75	0.88	4.53	3.3	0.002	0.56	0.0	0.04	15.13	0.00	2.529	3.69	2.03	3.0	97.0	0.0	0.93	0.33	0.72	0.89	3.42	8539	1121	6	0	1	2	0	logfile
✔	7S82	24889	2025-02-13	2021-09-17	3.5	3.79	3.54	3.8	0.005	0.72	0.0	0.04	13.22	0.00	2.097	17.60	0.00	7.7	92.3	0.0	-1.35	0.78	0.82	2.97	3.8	0.004	0.73	0.0	0.04	15.85	0.00	2.515	12.87	1.29	4.0	96.0	0.0	-1.18	1.09	0.78	0.82	1.82	4904	634	4	0	0	0	0	logfile
✔	7F6V	31482	2025-02-11	2021-06-25	3.66	4.27	—	4.2	0.005	0.77	0.0	0.05	13.91	0.00	2.356	10.62	0.00	6.8	93.2	0.0	0.27	0.60	0.78	1.08	4.2	0.003	0.66	0.0	0.04	17.25	0.00	2.640	8.65	1.76	3.7	96.3	0.0	4.56	0.84	0.61	0.78	1.17	5314	626	4	0	2	0	0	logfile
✔	7TRY	26103	2025-02-12	2022-01-31	3.7	4.15	—	4.0	0.004	0.80	0.0	0.05	7.34	0.01	2.261	3.44	0.00	1.7	98.3	0.0	1.03	0.67	0.74	1.05	4.0	0.005	0.78	0.0	0.05	14.35	0.00	2.349	15.00	3.55	3.4	96.6	0.0	1.33	2.52	0.69	0.79	0.99	8340	1211	6	0	0	0	0	logfile
✔	8D81	27242	2025-02-13	2022-06-07	3.9	4.14	3.89	4.1	0.004	0.65	0.0	0.05	14.94	0.00	2.266	9.87	1.32	7.1	92.4	0.6	-2.23	0.73	0.74	2.42	4.1	0.004	0.66	0.0	0.04	16.06	0.00	2.458	8.56	1.73	7.4	92.3	0.3	-1.74	0.56	0.76	0.81	1.90	9248	1198	3	0	2	0	0	logfile
✔	8JLZ	36409	2025-02-12	2023-06-04	3.09	2.32	3.33	2.1	0.005	0.71	0.0	0.04	13.33	0.01	2.170	6.28	0.12	3.7	96.3	0.0	-0.56	0.78	0.77	2.77	2.1	0.003	0.55	0.0	0.04	15.44	0.00	2.525	3.92	2.35	2.2	97.8	0.0	0.95	0.37	0.79	0.79	2.22	7730	1015	6	0	1	0	0	logfile

• ← previous
• Page 3 of 255
• next →