Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V4J	31713	2025-02-14	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.004	0.77	0.0	0.05	16.49	0.01	2.392	18.51	2.17	7.5	92.5	0.0	-1.54	0.51	0.63	0.58	1.13	9850	1275	5	0	0	0	0	logfile
✔	7Y3G	33594	2025-02-12	2022-06-10	2.77	2.32	2.89	2.1	0.004	0.66	0.0	0.04	16.44	0.01	2.029	7.02	3.04	3.9	96.1	0.0	0.49	0.79	0.81	2.50	2.1	0.003	0.58	0.0	0.04	16.59	0.00	2.489	3.57	3.51	3.6	96.4	0.0	0.90	0.84	0.80	0.82	1.91	7864	1001	5	0	0	0	0	logfile
✔	7WS2	32741	2025-02-11	2022-01-28	3.3	3.22	—	3.1	0.003	0.64	0.0	0.04	13.31	0.01	2.258	7.21	0.00	3.5	96.5	0.0	-1.86	0.68	0.78	3.08	3.1	0.005	0.73	0.0	0.05	15.74	0.01	2.577	6.60	3.30	6.6	93.4	0.0	-1.83	0.50	0.70	0.82	3.56	3343	431	3	0	0	0	0	logfile
✔	8Q73	18202	2025-02-11	2023-08-15	3.58	5.00	3.87	4.6	0.004	0.92	0.0	0.05	14.50	0.01	2.243	12.12	0.00	12.6	86.4	1.0	-2.53	0.65	0.76	0.56	4.6	0.003	0.85	0.0	0.05	16.44	0.00	2.575	14.04	1.86	12.2	86.9	0.9	-1.65	1.07	0.65	0.80	0.68	5909	779	1	0	0	0	0	logfile
✔	6FU8	4319	2025-02-10	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.79	0.0	0.04	15.48	0.00	2.443	12.46	1.39	8.8	90.0	1.2	-2.70	4.01	0.25	0.69	1.62	1364	82	1	0	0	0	711	logfile
✔	7ZXQ	15014	2025-02-14	2022-05-22	3.53	4.17	3.59	3.7	0.003	0.66	0.0	0.04	12.72	0.01	2.027	8.02	0.00	3.0	97.0	0.0	2.45	0.54	0.69	1.54	3.8	0.003	0.57	0.0	0.04	14.93	0.00	2.490	6.31	2.36	2.8	97.2	0.0	3.21	1.54	0.57	0.84	1.77	9930	1236	6	0	0	0	0	logfile
✘	8i6Q	35203	2025-02-11	2023-01-29	4.23	7.65	4.17	4.2	0.005	0.73	0.0	0.04	6.12	0.00	2.031	15.78	0.00	7.3	92.6	0.1	-1.63	0.70	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3975	810	4	0	0	0	0	logfile
✔	7PHG	13415	2025-02-11	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.72	0.0	0.05	13.56	0.00	2.407	17.00	0.00	14.3	85.7	0.0	-3.61	1.25	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✘	8FU6	29453	2025-02-13	2023-01-16	2.9	3.13	2.94	3.2	0.002	0.60	0.0	0.04	12.46	0.00	2.199	3.83	0.00	2.6	97.4	0.0	0.07	0.58	0.80	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8834	1112	6	0	0	0	0	logfile
✔	8Q3F	18126	2025-02-11	2023-08-04	3.77	4.64	3.79	4.2	0.005	1.12	0.0	0.07	15.05	0.01	2.339	3.11	0.00	3.1	96.9	0.0	-5.05	0.90	0.81	0.79	4.2	0.002	0.57	0.0	0.04	15.77	0.00	2.624	4.15	0.79	1.9	98.1	0.0	1.44	0.92	0.90	0.81	0.65	4599	578	1	0	0	0	0	logfile
✔	7BC5	12139	2025-02-10	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.004	0.81	0.0	0.05	17.27	0.00	2.517	15.24	5.34	7.5	92.5	0.0	-3.13	1.30	0.24	0.59	1.31	1200	161	1	0	0	0	0	logfile
✔	7WLA	32579	2025-02-14	2022-01-12	3.76	3.09	3.72	3.2	0.002	0.44	0.0	0.04	8.82	0.00	2.197	6.98	4.01	5.1	94.9	0.0	-4.06	0.70	0.68	0.60	3.0	0.004	0.78	0.0	0.05	14.14	0.00	2.464	15.83	4.19	7.2	92.7	0.1	-0.95	1.35	0.72	0.71	0.89	10193	1327	2	0	0	0	0	logfile
✔	7WRV	32736	2025-02-11	2022-01-27	2.47	2.59	—	2.7	0.003	0.60	0.0	0.04	14.42	0.00	2.061	3.93	0.58	2.9	97.1	0.0	0.27	0.47	0.74	3.28	2.6	0.003	0.58	0.0	0.05	16.32	0.00	2.380	3.62	2.32	5.2	94.8	0.0	-0.55	1.45	0.49	0.78	2.45	6359	427	3	0	0	0	3092	logfile
✔	8E2H	27836	2025-02-14	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.59	0.0	0.03	15.76	0.01	2.329	5.50	2.08	1.0	99.0	0.0	2.61	0.94	0.65	0.83	4.00	10412	656	2	0	0	40	5280	logfile
✔	7P6A	13223	2025-02-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.004	0.67	0.0	0.05	14.23	0.00	2.613	4.40	0.43	4.7	95.3	0.0	-2.63	0.83	0.55	0.90	7.68	4166	540	10	0	0	76	0	logfile
✔	8ESA	28573	2025-02-10	2022-10-13	3.4	3.68	3.37	3.6	0.004	0.49	0.0	0.04	14.83	0.00	2.243	5.75	0.30	4.0	96.0	0.0	-0.99	0.65	0.84	2.85	3.6	0.002	0.49	0.0	0.04	16.45	0.00	2.466	5.25	1.20	2.1	97.9	0.0	-0.18	0.38	0.64	0.86	2.00	3140	384	3	0	0	0	0	logfile
✔	8FEJ	29029	2025-02-14	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.57	0.0	0.04	12.58	0.00	2.425	7.73	0.00	5.7	94.3	0.0	-0.57	1.32	0.91	0.76	—	10464	1368	3	0	0	0	0	logfile
✔	6ZiK	11227	2025-02-12	2020-06-26	3.66	3.14	3.54	3.4	0.005	0.73	0.0	0.04	14.23	0.00	2.134	10.04	0.00	2.0	98.0	0.0	1.08	0.55	0.78	2.12	3.4	0.004	0.66	0.0	0.04	16.44	0.00	2.554	8.20	5.58	1.8	98.2	0.0	1.91	0.42	0.56	0.79	1.53	7735	1048	11	0	0	0	0	logfile
✔	7V4L	31715	2025-02-13	2021-08-13	3.4	3.80	—	3.8	0.005	0.82	1.0	0.06	15.20	0.01	2.102	18.13	3.71	8.8	90.6	0.5	-2.60	0.55	0.55	1.34	3.8	0.004	0.77	0.0	0.05	16.35	0.01	2.242	15.91	3.22	7.6	92.3	0.1	-2.87	0.74	0.59	0.62	1.38	9345	1190	5	0	0	0	0	logfile
✔	7XTK	33451	2025-02-10	2022-05-17	2.89	3.27	2.92	3.2	0.004	0.87	0.0	0.04	13.37	0.01	1.873	9.37	0.00	6.4	92.3	1.3	-1.05	0.59	0.83	2.77	3.2	0.003	0.66	0.0	0.04	14.88	0.01	2.584	7.34	1.18	6.6	92.8	0.5	0.75	1.73	0.57	0.83	1.73	3159	395	1	0	0	0	0	logfile

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