Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CXF	45988	2025-02-11	2024-07-31	3.02	3.58	3.03	3.3	0.006	0.68	0.0	0.04	25.40	0.00	1.874	7.88	0.00	0.0	0.0	0.0	—	0.92	0.90	—	3.3	0.008	0.72	0.0	0.04	24.51	0.00	1.792	5.56	0.00	0.0	0.0	0.0	—	0.38	0.93	0.92	—	4318	0	2	200	22	0	0	logfile
✔	7XD7	33138	2025-02-13	2022-03-26	3.02	3.40	—	3.1	0.003	0.61	0.0	0.04	23.14	0.00	1.736	0.77	0.00	0.0	0.0	0.0	—	0.90	0.86	—	3.1	0.008	0.75	0.0	0.04	23.35	0.01	1.843	7.12	0.00	0.0	0.0	0.0	—	2.03	0.92	0.92	—	8693	0	2	405	30	0	0	logfile
✔	9C4N	45191	2025-02-10	2024-06-04	2.9	2.74	—	3.0	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	3.0	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✘	5A7U	3079	2025-02-10	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	2	0	1	0	231	logfile
✘	5X1G	6701	2025-02-10	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	7DA4	30622	2025-02-10	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.93	0.0	0.04	11.82	0.00	2.605	10.10	0.00	20.0	80.0	0.0	-5.69	3.09	0.39	0.61	—	507	66	3	0	0	0	0	logfile
✔	9HGS	52166	2025-02-10	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.47	0.0	0.05	18.05	0.00	2.640	1.85	3.77	8.5	91.5	0.0	-4.24	0.53	0.26	0.76	3.58	526	75	1	0	0	0	0	logfile
✔	9Eo7	19846	2025-02-10	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.002	0.54	0.0	0.05	13.60	0.01	2.543	6.71	2.94	1.3	98.7	0.0	-1.78	0.74	0.27	0.87	3.36	595	77	1	0	0	0	0	logfile
✔	9EoE	19852	2025-02-10	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.005	0.82	0.0	0.06	16.92	0.01	2.631	1.68	4.41	4.0	96.0	0.0	-2.35	1.27	0.27	0.84	7.38	595	77	1	0	0	0	0	logfile
✔	6FU8	4319	2025-02-10	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.0	0.003	0.79	0.0	0.04	15.48	0.00	2.443	12.46	1.39	8.8	90.0	1.2	-2.70	4.01	0.25	0.69	1.62	1364	82	1	0	0	0	711	logfile
✔	7UiU	26553	2025-02-10	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.90	0.0	0.04	18.25	0.00	2.504	8.38	1.67	6.0	94.0	0.0	-2.70	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7KU5	23034	2025-02-10	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.003	0.67	0.0	0.05	15.81	0.01	2.630	10.16	1.67	11.6	88.4	0.0	-1.88	1.17	0.24	0.70	2.01	750	88	2	0	4	0	0	logfile
✔	6TGN	10499	2025-02-10	2019-11-17	3.9	3.83	—	4.0	0.010	1.73	0.0	0.12	11.93	0.01	2.161	5.17	1.39	4.7	95.3	0.0	-3.57	0.54	0.90	1.73	4.0	0.004	1.01	0.0	0.05	15.88	0.00	2.547	6.64	4.17	2.3	97.7	0.0	-0.12	1.13	0.53	0.82	0.52	672	88	1	0	0	0	0	logfile
✔	8A05	15048	2025-02-10	2022-05-26	3.4	3.47	3.11	3.5	0.002	0.43	0.0	0.05	12.67	0.00	2.328	2.02	0.00	2.2	97.8	0.0	0.42	0.37	0.84	2.71	3.5	0.002	0.46	0.0	0.05	14.53	0.00	2.627	2.02	1.20	2.2	97.8	0.0	0.38	0.20	0.36	0.85	2.71	764	91	2	0	5	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	5M6S	3451	2025-02-10	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.70	0.0	0.03	17.89	0.00	2.464	6.91	0.00	7.3	92.7	0.0	1.40	2.23	0.03	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7QKZ	14058	2025-02-10	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.53	0.0	0.38	19.56	0.01	2.194	11.82	2.02	0.0	100.0	0.0	-1.59	5.48	0.34	0.63	6.43	1701	99	9	0	0	0	891	logfile
✔	7X34	32978	2025-02-10	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.004	0.81	0.0	0.04	25.38	0.00	2.071	29.64	1.30	4.1	95.9	0.0	0.34	0.70	0.21	0.77	-0.93	2762	100	2	94	0	0	0	logfile
✔	6QJP	4565	2025-02-10	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.002	0.60	0.0	0.05	12.51	0.00	2.600	7.52	3.92	0.0	100.0	0.0	-2.97	1.60	0.31	0.71	2.85	816	105	3	0	0	0	0	logfile
✔	6QJM	4564	2025-02-10	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.51	0.00	2.622	3.93	2.86	2.0	98.0	0.0	-2.41	1.60	0.33	0.73	3.95	846	111	3	0	0	0	0	logfile

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