Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8J20	35940	2025-02-13	2023-04-14	3.2	2.23	3.26	2.1	0.006	0.71	2.0	0.06	17.90	0.00	2.197	10.83	0.62	4.4	95.0	0.5	0.12	0.74	0.73	1.15	2.0	0.005	0.75	0.0	0.05	18.10	0.01	2.467	12.03	4.89	6.1	93.5	0.4	-0.50	1.16	0.76	0.77	1.60	8832	1125	6	0	2	0	0	logfile
✔	8X1N	37997	2025-02-11	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.003	0.53	0.0	0.04	16.37	0.00	2.580	2.43	2.72	3.6	96.4	0.0	2.23	0.29	0.69	0.83	1.44	4763	591	3	0	8	0	0	logfile
✔	8J7P	36045	2025-02-10	2023-04-27	3.4	3.38	2.86	3.4	0.009	0.81	0.0	0.06	12.54	0.00	2.025	16.13	0.00	15.0	85.0	0.0	-5.75	0.35	0.87	6.32	3.5	0.004	0.66	0.0	0.05	15.12	0.00	2.550	8.75	2.65	8.8	91.2	0.0	-4.72	0.52	0.33	0.87	5.08	3258	405	3	0	0	0	0	logfile
✘	8HG0	34730	2025-02-11	2022-11-13	3.51	4.44	3.51	3.7	0.003	0.61	0.0	0.04	17.58	0.00	2.098	7.93	1.15	1.8	98.1	0.1	0.06	0.85	0.80	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6470	790	4	0	4	0	0	logfile
✔	8iES	35392	2025-02-12	2023-02-15	3.73	4.01	3.68	4.0	0.003	1.16	0.0	0.04	13.70	0.00	2.268	5.19	0.00	6.0	94.0	0.0	-3.84	0.60	0.66	0.28	3.9	0.003	0.99	0.0	0.04	16.19	0.00	1.870	5.87	2.39	8.5	91.5	0.0	-1.04	1.49	0.66	0.77	0.79	7965	1026	2	0	3	0	0	logfile
✔	8Q8V	18262	2025-02-12	2023-08-18	3.8	3.56	3.64	3.9	0.012	2.00	2.0	0.09	12.46	0.01	2.510	1.71	0.00	6.4	93.6	0.0	-2.75	0.30	0.69	4.41	4.0	0.003	0.68	0.0	0.05	14.58	0.00	2.404	10.82	0.76	7.3	92.7	0.0	-3.42	2.99	0.32	0.78	4.43	7032	450	6	0	0	0	3588	logfile
✔	8ENQ	28276	2025-02-11	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.004	0.92	0.0	0.05	15.78	0.00	2.503	22.21	1.87	10.7	89.3	0.0	-3.91	1.95	0.47	0.52	3.27	5593	777	7	0	0	0	0	logfile
✔	8SXT	40858	2025-02-11	2023-05-24	3.3	2.61	3.32	3.0	0.003	0.60	0.0	0.04	17.79	0.00	2.039	11.35	0.45	3.7	96.1	0.1	0.31	0.74	0.76	2.14	2.2	0.003	0.68	0.0	0.04	18.54	0.00	1.993	9.86	3.47	4.0	96.0	0.0	0.73	0.64	0.76	0.78	2.16	6382	726	5	18	2	0	0	logfile
✔	8F2M	28822	2025-02-11	2022-11-08	3.7	3.60	3.53	3.6	0.003	0.67	0.0	0.04	16.38	0.01	2.253	11.21	0.38	5.0	94.0	1.0	-0.85	0.33	0.72	1.58	3.6	0.004	0.75	0.0	0.04	17.09	0.01	2.408	8.97	2.88	7.4	91.6	1.0	-0.38	0.79	0.37	0.79	1.61	4696	592	4	0	0	0	0	logfile
✔	8iWR	35777	2025-02-12	2023-03-31	3.52	3.68	3.52	3.7	0.004	0.70	0.0	0.04	18.08	0.00	2.149	9.54	0.26	4.3	95.7	0.0	0.89	0.65	0.73	0.62	3.7	0.004	0.69	0.0	0.04	17.71	0.00	2.120	9.18	4.82	6.3	93.7	0.0	0.57	0.52	0.71	0.80	1.34	6871	893	2	0	3	0	0	logfile
✔	8KH5	37237	2025-02-12	2023-08-21	2.83	3.13	2.90	3.2	0.008	0.85	1.0	0.08	12.85	0.01	2.103	11.08	0.26	2.9	97.1	0.0	0.90	0.59	0.74	3.40	3.2	0.002	0.56	0.0	0.04	15.16	0.00	2.548	8.86	1.67	2.0	98.0	0.0	1.21	1.24	0.61	0.78	3.45	7838	1031	6	0	2	0	0	logfile
✘	8QRo	18621	2025-02-13	2023-10-09	2.6	3.08	2.53	2.9	0.002	0.52	0.0	0.04	11.99	0.00	2.231	6.31	0.31	1.5	98.5	0.0	0.95	0.65	0.87	3.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9273	1245	6	0	9	0	0	logfile
✔	8UC1	42112	2025-02-14	2023-09-25	3.4	3.74	3.42	3.8	0.005	0.72	0.0	0.05	14.10	0.01	2.220	15.14	0.71	4.2	95.8	0.0	1.30	0.66	0.76	2.67	3.8	0.003	0.57	0.0	0.04	15.05	0.00	2.598	8.36	3.17	4.1	95.8	0.2	1.66	0.38	0.58	0.78	2.43	10310	1336	4	0	2	0	0	logfile
✔	8W8B	37351	2025-02-13	2023-09-01	3.0	3.35	3.12	3.3	0.005	0.58	0.0	0.04	14.50	0.00	2.063	4.34	0.54	2.3	97.7	0.0	1.35	0.67	0.86	3.99	3.3	0.006	0.65	0.0	0.04	15.40	0.00	2.461	5.43	1.93	3.3	96.7	0.0	1.06	0.30	0.63	0.86	3.43	8734	1096	6	0	7	0	0	logfile
✔	8QSL	18635	2025-02-13	2023-10-10	2.81	3.65	2.98	3.5	0.004	0.67	0.0	0.04	15.58	0.00	1.968	13.05	0.12	8.7	91.3	0.0	1.51	0.61	0.78	1.49	3.5	0.004	0.92	0.0	0.05	15.78	0.00	2.453	10.69	2.32	7.4	92.6	0.0	1.02	1.19	0.58	0.77	1.31	8506	1046	4	0	16	0	0	logfile
✔	8JLF	36395	2025-02-12	2023-06-02	3.01	3.25	3.07	3.3	0.011	1.11	0.0	0.08	13.11	0.01	2.246	8.30	0.00	3.3	96.7	0.0	-0.19	0.50	0.76	2.96	3.3	0.003	0.50	0.0	0.04	14.63	0.00	2.601	7.07	1.48	2.3	97.7	0.0	0.91	0.97	0.58	0.83	2.66	8177	1012	4	0	5	0	0	logfile
✔	8Q97	18270	2025-02-11	2023-08-20	2.99	3.09	2.91	3.1	0.011	2.02	0.0	0.10	12.24	0.01	2.490	0.00	0.00	0.7	99.3	0.0	-2.45	0.41	0.79	4.66	3.1	0.003	0.75	0.0	0.05	15.95	0.00	2.473	3.02	0.81	2.7	97.3	0.0	-1.44	0.92	0.39	0.82	3.52	6642	426	6	0	0	0	3396	logfile
✔	8K44	36872	2025-02-11	2023-07-17	3.8	4.00	3.81	3.9	0.003	0.53	0.0	0.04	10.43	0.00	2.227	14.98	0.41	1.8	98.2	0.0	0.62	0.65	0.80	2.30	3.9	0.003	0.78	0.0	0.04	14.69	0.00	2.479	11.88	5.10	1.6	98.4	0.0	-0.01	0.64	0.66	0.81	1.82	6360	840	3	0	0	0	0	logfile
✔	9BUM	44912	2025-02-11	2024-05-17	3.63	3.97	3.60	3.9	0.005	0.97	0.0	0.06	14.42	0.01	2.278	5.93	0.43	4.3	95.7	0.0	-4.76	0.60	0.78	2.43	3.9	0.004	0.70	0.0	0.04	15.87	0.00	2.516	10.38	1.92	5.1	94.9	0.0	-0.51	1.02	0.60	0.78	2.14	4415	538	3	0	3	0	0	logfile
✔	8iBY	35349	2025-02-14	2023-02-10	3.47	3.81	3.66	3.7	0.003	0.62	0.0	0.03	23.52	0.01	2.187	11.40	0.00	4.6	95.3	0.1	0.06	0.77	0.76	1.66	3.7	0.002	0.60	0.0	0.04	23.54	0.00	2.196	9.46	3.43	3.8	96.1	0.1	0.34	1.60	0.76	0.77	1.56	10503	793	3	198	1	0	0	logfile

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