Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UKD	26577	2025-02-12	2022-04-01	2.88	3.39	3.14	3.3	0.004	0.62	0.0	0.04	12.08	0.00	2.195	9.18	0.00	1.9	98.1	0.0	1.30	0.58	0.83	2.72	3.3	0.003	0.61	0.0	0.04	14.92	0.00	2.537	7.07	1.42	1.9	98.1	0.0	2.25	0.90	0.48	0.77	2.68	8000	1036	5	0	4	0	0	logfile
✔	8iXL	35795	2025-02-14	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.45	0.0	0.04	16.16	0.00	2.555	5.30	2.26	0.4	99.6	0.0	5.66	1.12	0.68	0.85	0.96	10970	1455	35	0	0	0	0	logfile
✔	8YUT	39582	2025-02-12	2024-03-27	2.7	2.92	2.83	2.9	0.008	0.81	0.0	0.06	10.59	0.00	2.231	4.63	0.00	1.9	98.1	0.0	1.32	0.63	0.77	3.26	2.9	0.002	0.54	0.0	0.04	14.49	0.00	2.414	4.02	1.68	2.0	98.0	0.0	2.17	0.62	0.61	0.78	2.67	8229	1041	6	0	2	0	0	logfile
✔	8E1M	27825	2025-02-11	2022-08-10	2.9	3.48	2.86	3.2	0.007	0.77	0.0	0.04	14.84	0.00	2.179	7.34	0.00	2.7	97.3	0.0	-0.83	0.69	0.86	4.21	3.3	0.003	0.63	0.0	0.04	15.49	0.00	2.369	6.80	0.92	2.1	97.9	0.0	2.11	0.56	0.63	0.83	3.28	5691	760	7	0	2	0	0	logfile
✔	7ZT6	14955	2025-02-12	2022-05-09	3.5	4.70	3.59	3.9	0.006	0.71	0.0	0.05	13.21	0.00	2.203	14.00	0.70	3.9	96.1	0.0	0.29	0.93	0.88	2.12	3.9	0.004	0.66	0.0	0.04	14.33	0.00	2.454	9.40	0.93	2.7	97.3	0.0	0.81	0.73	0.93	0.88	1.94	8073	1031	3	0	1	0	0	logfile
✔	8DXR	27774	2025-02-14	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.529	0.13	0.00	13.0	86.9	0.1	0.32	0.35	0.68	0.72	—	10435	2101	7	0	0	0	0	logfile
✔	7CN0	30412	2025-02-11	2020-07-29	3.9	3.96	—	3.9	0.004	0.62	0.0	0.04	13.32	0.00	1.843	14.90	0.00	8.1	91.9	0.0	-2.90	0.55	0.77	2.36	3.9	0.002	0.65	0.0	0.04	15.31	0.00	2.629	10.34	2.78	6.2	93.8	0.0	0.78	0.57	0.55	0.76	1.28	6602	884	5	0	2	0	0	logfile
✔	7RTU	24689	2025-02-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.58	0.0	0.04	16.13	0.00	2.479	5.86	1.88	2.5	97.5	0.0	4.23	0.33	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	8AQW	15592	2025-02-11	2022-08-13	3.3	3.63	3.42	3.6	0.002	0.59	0.0	0.04	15.58	0.00	2.177	5.96	0.15	6.1	93.6	0.3	-0.74	0.61	0.76	2.62	3.6	0.004	0.69	0.0	0.04	15.55	0.00	2.462	6.68	1.02	6.4	93.4	0.3	-0.90	0.41	0.64	0.79	2.36	6457	789	4	0	3	0	0	logfile
✔	7VX5	32169	2025-02-11	2021-11-12	3.8	4.03	—	4.1	0.003	0.65	0.0	0.04	9.06	0.00	2.246	7.43	0.14	1.0	99.0	0.0	-2.69	0.56	0.68	2.10	4.0	0.003	0.63	0.0	0.04	14.30	0.00	2.436	7.03	1.15	1.9	98.1	0.0	0.82	0.84	0.62	0.75	2.03	6487	791	4	0	6	0	0	logfile
✔	8B3J	15830	2025-02-11	2022-09-16	3.1	3.34	3.18	3.3	0.005	0.63	0.0	0.05	15.71	0.00	2.144	7.52	0.00	7.6	92.4	0.0	-2.49	0.44	0.88	3.25	3.3	0.003	0.60	0.0	0.04	16.28	0.00	2.495	4.56	2.75	6.5	93.5	0.0	-2.18	0.27	0.43	0.87	2.87	5688	718	3	0	0	0	0	logfile
✔	7TD6	25824	2025-02-11	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.80	0.0	0.05	18.75	0.00	2.365	10.43	2.35	7.1	92.9	0.0	-3.87	1.31	0.42	0.76	3.81	5575	690	5	0	0	0	0	logfile
✔	7SQH	25385	2025-02-12	2021-11-05	2.5	2.77	—	3.0	0.006	0.74	0.0	0.05	19.41	0.00	2.257	3.85	0.00	2.4	97.6	0.0	1.93	0.85	0.83	3.23	3.0	0.004	0.64	0.0	0.05	17.02	0.00	2.520	5.01	1.66	3.3	96.7	0.0	1.78	0.62	0.87	0.87	3.26	6954	849	9	0	12	21	0	logfile
✔	8HMV	34903	2025-02-12	2022-12-05	2.91	3.27	3.06	3.2	0.005	0.63	0.0	0.04	13.38	0.00	2.150	4.96	0.00	3.3	96.7	0.0	-0.72	0.67	0.86	4.20	3.2	0.005	0.59	0.0	0.04	15.65	0.00	2.522	3.28	1.46	2.8	97.2	0.0	0.63	0.37	0.66	0.87	3.62	8127	1022	5	0	0	0	0	logfile
✔	8AQU	15590	2025-02-11	2022-08-13	3.22	3.49	3.40	3.5	0.003	0.62	0.0	0.04	16.84	0.00	2.240	8.39	0.15	8.2	91.8	0.0	-1.47	0.54	0.66	1.53	3.5	0.003	1.07	0.0	0.04	16.71	0.01	2.372	7.42	2.96	7.9	92.1	0.0	-1.64	0.64	0.55	0.71	0.81	6340	777	4	0	3	0	0	logfile
✔	5M6S	3451	2025-02-10	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.70	0.0	0.03	17.89	0.00	2.464	6.91	0.00	7.3	92.7	0.0	1.40	2.23	0.03	0.07	—	1593	98	1	0	0	0	793	logfile
✔	6SK0	10219	2025-02-11	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.003	0.63	0.0	0.05	17.37	0.00	2.622	9.92	0.49	3.3	96.7	0.0	-1.48	1.09	0.80	0.90	6.63	5826	792	3	0	0	0	0	logfile
✔	6X0V	21985	2025-02-10	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.03	11.61	0.00	2.465	17.39	0.00	4.0	96.0	0.0	2.56	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	7TQD	26066	2025-02-13	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.60	0.0	0.04	14.96	0.00	1.069	3.32	1.10	2.5	97.5	0.0	1.10	2.47	0.81	0.84	3.85	8690	1096	4	0	5	0	0	logfile
✔	7CAD	30327	2025-02-14	2020-06-08	3.41	3.74	—	3.7	0.004	0.72	0.0	0.05	13.11	0.00	2.196	11.28	0.57	7.6	92.3	0.2	-4.35	0.75	0.84	2.98	3.7	0.003	0.66	0.0	0.04	15.06	0.00	2.466	8.03	2.28	4.7	95.3	0.0	-1.30	0.42	0.73	0.84	2.07	10026	1318	4	0	0	0	0	logfile

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