Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G14	29661	2025-02-14	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.47	0.0	0.05	15.70	0.00	2.620	1.05	0.28	2.5	97.5	0.0	0.81	0.20	0.88	0.93	5.01	10020	1336	4	0	0	0	0	logfile
✔	9B5i	44213	2025-02-14	2024-03-22	2.7	3.19	2.75	3.0	0.003	0.49	0.0	0.04	9.58	0.00	1.989	1.16	0.85	1.8	98.2	0.0	1.34	0.68	0.77	4.07	3.0	0.002	0.47	0.0	0.04	13.06	0.00	2.010	3.11	1.41	1.5	98.5	0.0	1.54	1.10	0.67	0.77	3.37	9536	1209	7	0	5	0	0	logfile
✔	8G3K	29700	2025-02-10	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	16.63	0.00	2.600	4.59	1.23	0.4	99.6	0.0	4.75	1.11	0.46	0.83	4.89	2244	285	2	0	0	0	0	logfile
✔	8HZC	35088	2025-02-10	2023-01-08	3.2	3.16	2.79	3.3	0.002	0.51	0.0	0.05	13.53	0.00	2.497	11.14	0.00	11.3	88.7	0.0	-5.03	0.39	0.85	4.46	3.3	0.003	0.47	0.0	0.05	16.23	0.00	2.640	5.18	3.21	9.4	90.6	0.0	-3.45	0.91	0.37	0.85	3.35	3108	450	6	0	0	0	0	logfile
✔	8W35	43762	2025-02-10	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8GEA	29962	2025-02-11	2023-03-06	3.5	3.84	3.59	3.8	0.003	0.48	0.0	0.04	12.73	0.00	2.269	6.68	0.00	2.1	97.9	0.0	1.14	0.69	0.81	2.99	3.8	0.002	0.47	0.0	0.04	14.43	0.00	2.517	4.85	2.51	1.6	98.4	0.0	1.50	0.26	0.70	0.81	2.69	6551	902	5	0	1	0	0	logfile
✔	8FF3	29037	2025-02-10	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.47	0.0	0.05	11.47	0.00	2.698	4.58	0.00	0.7	99.3	0.0	-1.94	0.46	0.35	0.72	4.33	2190	150	6	0	0	0	1122	logfile
✔	7YNR	33969	2025-02-10	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.003	0.47	0.0	0.05	12.92	0.00	2.618	3.46	0.00	4.2	95.8	0.0	-1.92	0.22	0.41	0.88	5.75	2526	366	6	0	0	0	0	logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	9HGS	52166	2025-02-10	2024-11-20	3.0	2.93	2.85	3.2	0.010	0.99	0.0	0.08	18.25	0.01	2.341	0.92	1.89	11.3	88.7	0.0	-4.52	0.26	0.73	2.80	3.2	0.002	0.47	0.0	0.05	18.05	0.00	2.640	1.85	3.77	8.5	91.5	0.0	-4.24	0.53	0.26	0.76	3.58	526	75	1	0	0	0	0	logfile
✔	8Vi3	43247	2025-02-12	2024-01-03	2.9	3.36	3.11	3.3	0.002	0.44	0.0	0.04	12.32	0.00	2.186	4.59	0.00	1.2	98.8	0.0	2.50	0.69	0.87	5.29	3.3	0.002	0.47	0.0	0.04	14.71	0.00	2.494	3.78	0.78	1.7	98.3	0.0	2.31	0.33	0.64	0.89	4.41	7359	924	3	0	0	0	0	logfile
✔	9J7V	61211	2025-02-10	2024-08-19	3.3	3.54	3.36	3.6	0.007	0.97	0.0	0.04	16.85	0.00	2.210	2.17	0.00	4.6	95.4	0.0	1.94	0.60	0.84	1.45	3.6	0.003	0.47	0.0	0.04	15.98	0.00	2.635	2.51	0.65	2.6	97.4	0.0	2.16	0.25	0.58	0.84	1.69	2975	352	2	0	8	0	0	logfile
✔	7QKR	14049	2025-02-14	2021-12-18	3.2	3.37	3.13	3.3	0.007	0.86	0.0	0.06	15.13	0.01	2.084	6.53	0.40	1.8	98.2	0.0	0.20	0.73	0.88	2.71	3.3	0.003	0.47	0.0	0.04	15.54	0.00	2.064	4.27	1.58	1.3	98.7	0.0	1.85	0.31	0.72	0.89	2.03	9403	1199	2	0	4	0	0	logfile
✔	9H1P	51769	2025-02-14	2024-10-10	3.1	3.40	3.10	3.4	0.004	0.67	0.0	0.04	13.91	0.01	2.482	1.72	0.00	0.0	100.0	0.0	-1.00	0.50	0.78	4.07	3.4	0.003	0.47	0.0	0.04	14.86	0.00	2.659	2.51	1.13	0.3	99.7	0.0	1.41	0.42	0.43	0.74	3.09	10668	1332	24	0	0	0	0	logfile
✔	8Uo2	42425	2025-02-11	2023-10-19	3.6	4.02	3.83	4.0	0.005	0.76	0.0	0.05	13.65	0.00	2.237	5.87	0.40	1.7	98.3	0.0	1.29	0.63	0.80	3.52	4.0	0.002	0.47	0.0	0.04	14.61	0.00	2.502	3.19	2.20	1.5	98.5	0.0	1.96	0.93	0.65	0.81	2.99	6504	956	6	0	2	0	0	logfile
✔	8TEJ	41188	2025-02-11	2023-07-06	2.55	2.41	2.49	2.5	0.004	0.57	0.0	0.04	17.73	0.00	1.984	2.78	2.87	4.7	95.3	0.0	2.14	0.58	0.85	2.31	2.5	0.002	0.47	0.0	0.04	17.83	0.00	2.488	4.43	1.44	3.5	96.5	0.0	2.53	0.23	0.57	0.85	2.16	3925	494	2	0	0	22	0	logfile
✔	8Ti8	41281	2025-02-12	2023-07-19	2.9	3.56	2.95	3.4	0.003	0.46	0.0	0.04	8.83	0.00	2.277	1.89	0.66	1.7	98.3	0.0	2.48	0.88	0.91	2.40	3.4	0.003	0.47	0.0	0.04	12.76	0.00	2.442	2.27	0.33	1.7	98.3	0.0	2.52	0.49	0.85	0.89	2.26	7887	976	4	0	0	0	0	logfile
✔	8GEF	29968	2025-02-11	2023-03-06	3.8	4.05	3.84	4.0	0.014	0.96	0.0	0.04	13.65	0.00	2.302	7.38	1.42	1.2	98.8	0.0	2.13	0.71	0.80	2.52	4.0	0.003	0.47	0.0	0.04	13.67	0.00	2.533	5.96	4.26	1.2	98.8	0.0	2.08	1.09	0.71	0.80	2.27	6216	941	5	0	1	0	0	logfile
✔	7JGF	22325	2025-02-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.47	0.0	0.04	13.32	0.00	2.404	44.58	0.41	4.8	95.2	0.0	0.96	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	8GE4	29955	2025-02-11	2023-03-06	3.3	3.62	3.40	3.6	0.003	0.45	0.0	0.04	12.45	0.00	2.248	5.38	0.00	2.0	98.0	0.0	1.63	0.70	0.85	3.35	3.6	0.002	0.47	0.0	0.04	14.36	0.00	2.613	4.76	2.22	2.0	98.0	0.0	1.88	0.28	0.70	0.85	2.82	6646	901	6	0	1	1	0	logfile

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