Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PN1	13545	2025-02-14	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.002	0.55	0.0	0.04	14.74	0.00	2.414	4.91	0.71	2.6	97.4	0.0	1.44	0.98	0.60	0.80	0.89	10384	657	1	0	0	0	5237	logfile
✔	7SCG	25034	2025-02-13	2021-09-28	3.0	3.41	—	3.3	0.005	0.61	0.0	0.04	12.87	0.00	2.274	9.34	0.00	4.4	95.6	0.0	-0.30	0.75	0.88	4.53	3.3	0.002	0.56	0.0	0.04	15.13	0.00	2.529	3.69	2.03	3.0	97.0	0.0	0.93	0.33	0.72	0.89	3.42	8539	1121	6	0	1	2	0	logfile
✔	6VN7	21249	2025-02-13	2020-01-29	3.2	3.53	—	3.7	0.004	0.90	0.0	0.07	8.80	0.01	2.254	4.22	0.00	2.8	97.2	0.0	-2.38	0.66	0.78	2.53	3.7	0.002	0.56	0.0	0.04	13.39	0.00	2.468	4.57	2.11	2.0	98.0	0.0	1.24	0.70	0.61	0.77	1.63	8620	1052	7	0	10	0	0	logfile
✔	8EJC	28177	2025-02-13	2022-09-16	3.0	3.01	3.04	3.1	0.006	0.64	0.0	0.04	13.37	0.00	2.199	9.48	0.00	3.6	96.4	0.0	1.20	0.69	0.84	3.08	3.2	0.002	0.62	0.0	0.04	15.96	0.00	2.530	6.26	1.66	2.3	97.7	0.0	1.50	0.40	0.69	0.85	2.00	8659	1132	6	0	1	0	0	logfile
✔	7TYJ	26181	2025-02-11	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.002	0.60	0.0	0.04	17.07	0.00	2.558	5.73	2.33	9.9	89.9	0.1	-1.91	1.54	0.68	0.83	3.16	6338	808	2	0	0	0	0	logfile
✔	7VFX	31962	2025-02-13	2021-09-14	2.8	2.73	2.85	2.9	0.003	0.65	0.0	0.05	15.03	0.00	2.225	5.38	0.00	3.1	96.9	0.0	0.41	0.70	0.87	3.94	2.9	0.002	0.56	0.0	0.04	15.39	0.00	2.492	4.60	0.82	2.3	97.7	0.0	1.15	1.25	0.71	0.89	3.60	9004	1139	7	0	4	0	0	logfile
✔	7TS0	26104	2025-02-13	2022-01-31	2.8	3.02	—	3.1	0.004	0.79	0.0	0.05	8.38	0.01	2.273	3.92	0.10	1.5	98.5	0.0	-1.24	0.66	0.80	2.15	3.0	0.002	0.56	0.0	0.04	15.36	0.00	2.531	4.84	2.35	1.6	98.4	0.0	1.67	1.62	0.62	0.83	2.81	9383	1186	6	0	0	0	0	logfile
✔	7NNT	12483	2025-02-12	2021-02-25	3.4	3.53	3.51	3.5	0.005	0.66	0.0	0.05	13.72	0.00	2.218	6.31	0.00	2.2	97.8	0.0	-0.55	0.67	0.82	2.48	3.5	0.002	0.49	0.0	0.04	15.50	0.00	2.585	6.51	1.93	1.6	98.4	0.0	0.89	0.31	0.67	0.83	1.84	7666	979	4	0	0	0	0	logfile
✔	6NUS	0521	2025-02-11	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.57	0.0	0.09	9.78	0.01	2.301	0.99	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.002	0.61	0.0	0.04	15.08	0.00	2.547	7.78	1.78	2.3	97.7	0.0	0.98	1.87	0.52	0.70	1.06	6632	827	3	0	2	0	0	logfile
✔	8CSY	26975	2025-02-11	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.002	0.51	0.0	0.04	17.27	0.00	2.642	4.67	3.65	1.7	98.3	0.0	1.08	0.48	0.63	0.87	4.20	4638	584	4	0	0	19	0	logfile
✔	7PQ5	13587	2025-02-13	2021-09-16	3.17	3.58	3.09	3.4	0.005	0.85	0.0	0.05	15.55	0.01	2.255	3.50	2.82	4.5	95.3	0.2	-0.13	0.85	0.87	5.15	3.4	0.002	0.62	0.0	0.04	15.87	0.00	2.384	2.78	0.56	4.5	95.5	0.0	0.14	1.10	0.82	0.88	4.45	8512	1047	1	0	0	0	0	logfile
✔	7V0X	26952	2025-02-10	2022-05-11	3.0	2.83	2.92	2.9	0.002	0.63	0.0	0.04	19.06	0.01	2.211	6.52	5.05	4.0	96.0	0.0	0.72	0.61	0.88	3.78	2.9	0.002	0.50	0.0	0.04	18.66	0.00	2.643	8.64	3.03	4.6	95.4	0.0	2.13	0.46	0.59	0.87	3.64	2818	375	1	0	0	0	0	logfile
✔	7B4L	12002	2025-02-12	2020-12-02	3.1	3.51	3.28	3.4	0.005	1.05	0.0	0.04	16.18	0.00	2.141	9.67	0.00	2.0	98.0	0.0	-0.91	0.62	0.79	2.85	3.4	0.002	0.60	0.0	0.04	16.14	0.00	2.355	5.82	1.96	2.0	98.0	0.0	1.67	1.15	0.62	0.80	2.01	7030	886	6	0	22	26	0	logfile
✔	7LTo	23517	2025-02-11	2021-02-19	3.2	3.37	—	3.3	0.003	0.71	0.0	0.05	15.41	0.00	2.232	11.24	3.25	9.1	90.9	0.0	-4.26	0.71	0.77	2.73	3.3	0.002	0.64	0.0	0.04	17.00	0.00	2.222	6.42	3.25	6.9	93.1	0.0	-0.29	1.17	0.71	0.79	2.37	4754	605	2	0	0	0	0	logfile
✔	8ioD	35616	2025-02-12	2023-03-10	2.59	2.77	2.63	2.8	0.005	0.80	0.0	0.05	14.07	0.01	2.038	13.91	0.00	5.0	95.0	0.0	-0.83	0.53	0.66	2.35	2.8	0.002	0.57	0.0	0.04	16.48	0.00	2.323	8.98	1.72	2.9	97.1	0.0	0.47	0.37	0.52	0.67	1.66	8061	1023	8	0	3	0	0	logfile
✔	7Ki0	22882	2025-02-13	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.87	0.0	0.06	13.74	0.00	2.218	7.79	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.002	0.52	0.0	0.04	16.06	0.00	2.599	3.42	1.43	2.2	97.8	0.0	1.63	0.98	0.68	0.89	3.78	9242	1143	12	0	1	79	0	logfile
✔	7WBJ	32401	2025-02-13	2021-12-16	3.42	3.69	—	3.7	0.004	0.61	0.0	0.05	14.59	0.00	1.264	12.09	0.21	4.9	95.1	0.0	-1.06	0.65	0.74	2.02	3.7	0.002	0.57	0.0	0.04	16.58	0.00	2.341	8.04	2.47	4.3	95.7	0.0	-0.45	0.39	0.64	0.76	1.71	8989	1146	6	0	0	0	0	logfile
✔	7JGG	22326	2025-02-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.002	0.49	0.0	0.03	12.90	0.00	2.246	73.58	0.00	4.5	95.5	0.0	1.76	1.71	0.67	0.70	—	4210	506	1	0	0	0	28	logfile
✔	7SHS	25135	2025-02-12	2021-10-11	4.1	3.40	—	4.3	0.003	0.74	0.0	0.04	13.65	0.01	2.349	5.95	0.00	1.8	98.2	0.0	0.74	0.60	0.71	—	4.1	0.002	0.59	0.0	0.04	14.36	0.00	2.430	10.26	0.00	2.0	98.0	0.0	2.09	1.87	0.61	0.74	—	6873	849	3	0	0	0	0	logfile
✔	7SAX	24958	2025-02-11	2021-09-23	3.0	2.60	2.97	3.0	0.007	0.66	0.0	0.04	13.54	0.00	2.174	5.46	0.00	3.3	96.7	0.0	1.22	0.58	0.85	2.70	2.9	0.002	0.51	0.0	0.04	17.33	0.00	2.473	5.27	2.33	2.4	97.6	0.0	3.06	0.50	0.59	0.86	1.72	5305	689	7	0	0	0	0	logfile

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