Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FG3	31577	2025-02-13	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	3.9	0.004	0.94	0.0	0.05	16.64	0.01	2.344	20.63	2.99	13.8	85.6	0.6	-3.61	0.75	0.23	0.44	-0.04	9054	1166	2	0	0	0	0	logfile
✔	6Y5K	10700	2025-02-14	2020-02-25	4.2	4.47	4.20	4.2	0.004	0.76	0.0	0.05	13.06	0.00	1.781	10.42	0.00	2.6	97.4	0.0	-1.98	0.86	0.76	—	4.2	0.007	0.86	0.0	0.05	12.95	0.01	2.340	21.64	0.00	4.8	95.2	0.0	-1.04	1.51	0.87	0.80	—	10614	1335	9	0	6	0	0	logfile
✔	7KJR	22898	2025-02-11	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	19.50	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.54	0.0	0.04	17.41	0.00	2.502	7.73	1.23	1.6	98.4	0.0	2.23	0.24	0.66	0.87	4.90	3840	448	8	0	2	122	0	logfile
✔	8B8T	15921	2025-02-12	2022-10-05	4.2	3.64	4.09	4.1	0.011	1.78	2.0	0.09	14.33	0.01	2.558	0.50	1.78	3.9	95.8	0.3	-1.08	0.73	0.77	—	4.0	0.004	0.73	0.0	0.04	13.62	0.00	2.405	6.05	0.00	3.9	96.1	0.0	0.59	0.52	0.73	0.76	—	7180	989	4	0	0	0	0	logfile
✔	6XTB	10618	2025-02-10	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.005	1.18	0.0	0.05	9.45	0.00	2.559	9.01	0.00	25.1	74.9	0.0	-6.24	2.44	0.34	0.65	—	1161	235	1	0	0	0	0	logfile
✔	7K8A	22724	2025-02-14	2020-09-26	3.65	3.57	—	3.7	0.004	0.92	1.0	0.05	13.38	0.01	2.226	16.09	0.17	6.4	93.6	0.0	-1.30	0.40	0.55	0.67	3.7	0.004	0.84	0.0	0.05	16.12	0.01	2.499	14.84	4.59	6.0	93.9	0.1	-1.11	0.45	0.43	0.57	0.58	5513	723	1	0	0	0	0	logfile
✔	6X13	21987	2025-02-11	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.90	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.004	0.70	0.0	0.04	16.00	0.01	2.450	8.05	2.15	4.8	95.2	0.0	1.80	0.39	0.64	0.84	1.74	3136	417	2	0	1	0	0	logfile
✔	7D3S	30566	2025-02-12	2020-09-20	2.9	2.73	2.75	2.8	0.004	0.64	0.0	0.04	13.88	0.00	2.237	10.24	0.00	4.0	96.0	0.0	-2.28	0.56	0.75	3.07	2.8	0.005	0.64	0.0	0.04	16.78	0.00	2.529	7.71	2.12	4.2	95.8	0.0	0.52	0.46	0.60	0.79	2.70	8338	1048	6	0	0	0	0	logfile
✔	7A5R	11648	2025-02-14	2020-08-21	3.7	3.90	3.68	3.8	0.004	0.81	0.0	0.05	14.01	0.01	2.028	3.92	0.67	7.6	92.3	0.2	-1.97	0.73	0.78	2.27	3.8	0.003	0.66	0.0	0.04	15.35	0.00	2.444	3.63	3.36	4.6	95.4	0.0	-1.06	0.59	0.75	0.80	2.24	10608	1358	8	0	4	0	0	logfile
✔	7EKL	31169	2025-02-13	2021-04-05	3.5	3.66	—	3.6	0.005	1.13	0.0	0.05	11.15	0.01	2.141	5.25	0.81	2.9	96.9	0.2	-5.70	0.72	0.83	3.54	3.6	0.002	0.64	0.0	0.04	14.70	0.00	2.042	6.41	2.82	3.1	96.9	0.0	-0.16	1.51	0.72	0.84	2.28	9394	1180	4	0	4	0	0	logfile
✔	7R6M	24282	2025-02-12	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.54	0.01	1.758	13.81	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	5V4S	8632	2025-02-14	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.005	0.68	0.0	0.04	12.89	0.00	2.587	4.09	0.00	3.7	96.3	0.0	2.23	1.03	0.60	0.77	—	10756	1548	4	0	0	0	0	logfile
✔	8EFD	28080	2025-02-12	2022-09-08	3.8	4.67	3.83	3.9	0.002	0.49	0.0	0.04	14.10	0.00	2.048	8.46	0.13	3.8	96.2	0.0	0.81	0.88	0.79	0.38	3.9	0.002	0.67	0.0	0.04	15.96	0.00	2.550	8.74	1.17	4.1	95.9	0.0	0.64	0.56	0.88	0.79	0.54	7107	886	2	0	0	0	0	logfile
✔	6V0V	21003	2025-02-12	2019-11-19	3.61	3.94	—	3.7	0.008	1.01	0.0	0.06	21.03	0.01	1.932	10.72	0.40	7.3	92.6	0.1	-3.85	0.83	0.81	2.10	3.7	0.004	0.72	0.0	0.04	21.26	0.00	2.222	10.15	1.59	4.8	95.2	0.0	-0.36	1.29	0.83	0.82	1.90	8192	887	5	60	3	0	0	logfile
✔	7DSW	30848	2025-02-12	2021-01-03	3.3	2.98	—	3.3	0.008	0.90	0.0	0.05	14.35	0.00	2.222	11.76	1.11	7.2	92.8	0.0	-0.48	0.61	0.79	2.77	3.3	0.004	0.65	0.0	0.04	15.53	0.00	2.595	7.07	2.49	6.2	93.8	0.0	1.08	0.39	0.63	0.81	1.39	6720	840	4	0	12	0	0	logfile
✔	6RAi	4776	2025-02-14	2019-04-06	2.9	3.05	3.00	3.0	0.009	1.40	6.0	0.08	10.56	0.01	1.948	9.46	0.00	3.4	96.6	0.0	-3.24	0.72	0.81	3.71	2.9	0.003	0.64	0.0	0.04	15.83	0.00	1.930	6.31	2.39	2.8	97.2	0.0	1.13	1.34	0.74	0.84	2.63	10191	1281	7	0	4	6	0	logfile
✔	6TKo	10515	2025-02-12	2019-11-28	3.3	3.40	3.21	3.6	0.005	0.51	0.0	0.04	12.60	0.00	2.079	2.87	0.23	1.0	99.0	0.0	-2.07	0.71	0.73	2.06	3.5	0.006	0.77	0.0	0.05	14.92	0.01	2.505	16.25	2.45	2.4	97.6	0.0	-0.24	1.74	0.76	0.81	2.66	8085	1052	5	0	1	0	0	logfile
✔	7SHL	25128	2025-02-13	2021-10-09	3.5	3.40	—	2.9	0.003	0.65	0.0	0.04	14.14	0.00	2.087	15.79	0.00	3.9	96.1	0.0	0.05	0.83	0.78	1.51	2.9	0.003	0.71	0.0	0.04	16.51	0.00	2.451	12.53	1.34	3.1	96.9	0.0	0.43	0.94	0.83	0.78	1.33	9207	1138	6	0	1	0	0	logfile
✔	7F3Q	31434	2025-02-12	2021-06-16	3.3	3.52	—	3.4	0.006	0.81	0.0	0.06	13.82	0.01	1.848	10.11	2.14	5.6	94.3	0.1	-0.94	0.81	0.84	3.49	3.4	0.003	0.65	0.0	0.04	15.46	0.00	2.399	6.10	2.48	4.6	95.4	0.0	0.07	1.12	0.82	0.90	3.52	8003	1050	7	0	2	0	0	logfile
✔	8Gi1	40059	2025-02-14	2023-03-13	3.65	3.39	3.63	3.8	0.017	1.44	12.0	0.10	11.69	0.01	1.301	10.30	0.86	4.1	95.9	0.0	1.00	0.61	0.69	2.76	3.8	0.003	0.57	0.0	0.04	15.63	0.00	2.325	4.51	2.67	4.6	95.4	0.0	2.41	0.83	0.67	0.78	2.06	9704	1152	8	0	0	0	0	logfile

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