Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8P34	17383	2025-02-10	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.47	0.0	0.05	14.27	0.00	2.698	0.69	0.00	3.3	96.7	0.0	-1.59	0.32	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✔	9Eo9	19849	2025-02-10	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.006	0.87	0.0	0.05	15.00	0.00	2.494	4.14	2.94	6.0	94.0	0.0	-2.85	1.24	0.29	0.79	3.58	1190	154	2	0	0	0	0	logfile
✔	8iZZ	35878	2025-02-10	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.7	0.023	3.51	1.0	0.14	27.18	0.01	2.258	39.79	22.73	50.0	47.0	3.0	-6.99	3.53	0.29	0.49	-0.29	1342	198	22	0	0	0	0	logfile
✔	7P3R	13185	2025-02-12	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.004	0.60	0.0	0.04	14.74	0.00	2.471	3.92	5.62	1.7	98.3	0.0	3.08	0.57	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7QL4	14063	2025-02-12	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.005	1.25	0.0	0.05	15.04	0.01	2.462	8.77	1.26	2.7	97.3	0.0	-1.94	2.12	0.30	0.74	3.59	7074	456	6	0	0	0	3606	logfile
✔	8oLG	16957	2025-02-10	2023-03-30	4.2	3.16	3.54	4.2	0.002	0.41	0.0	0.05	9.55	0.00	2.261	9.57	0.00	13.5	86.5	0.0	-4.82	0.25	0.63	—	4.2	0.006	1.00	0.0	0.06	15.89	0.00	2.594	19.83	0.00	17.8	82.2	0.0	-4.83	1.60	0.30	0.66	—	1490	195	5	0	0	0	0	logfile
✔	8X5H	38069	2025-02-10	2023-11-17	3.47	3.52	3.25	3.7	0.009	0.80	0.0	0.06	14.23	0.00	2.023	16.44	0.00	14.3	85.7	0.0	-5.99	0.31	0.84	4.70	3.7	0.003	0.62	0.0	0.05	15.63	0.00	2.522	5.99	4.23	8.8	91.2	0.0	-5.03	0.44	0.30	0.84	3.68	3258	405	3	0	0	0	0	logfile
✔	8Ri9	19184	2025-02-11	2023-12-18	3.3	3.49	2.64	3.5	0.011	1.88	0.0	0.08	12.25	0.01	2.613	3.55	2.38	3.6	96.4	0.0	-1.61	0.44	0.71	6.15	3.7	0.003	0.54	0.0	0.05	11.83	0.00	2.539	2.37	0.48	10.2	89.8	0.0	-2.19	0.64	0.30	0.65	5.50	4230	295	5	0	0	0	2180	logfile
✔	8X63	38078	2025-02-10	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	4.1	0.004	0.76	0.0	0.04	17.21	0.01	2.595	7.89	2.03	7.6	92.4	0.0	-0.28	0.80	0.30	0.48	1.25	2252	270	2	0	1	0	0	logfile
✔	8P36	17384	2025-02-10	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.53	0.0	0.04	18.59	0.00	2.592	4.91	1.57	3.8	96.2	0.0	1.23	0.48	0.30	0.88	2.44	1223	161	2	0	2	0	0	logfile
✔	7Yo3	33980	2025-02-13	2022-08-01	3.1	2.47	2.93	2.9	0.004	0.67	0.0	0.05	13.95	0.01	2.207	9.01	0.21	3.7	96.3	0.0	0.21	0.26	0.61	1.96	2.9	0.002	0.55	0.0	0.04	16.35	0.00	2.057	6.51	2.06	2.1	97.9	0.0	0.75	0.77	0.30	0.74	2.35	8961	1144	3	0	3	0	0	logfile
✔	8iY7	35816	2025-02-10	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.024	3.39	0.0	0.11	26.65	0.01	2.171	45.45	14.58	41.7	51.4	6.9	-6.71	2.44	0.30	0.58	1.40	1464	216	24	0	0	0	0	logfile
✔	8RB5	19026	2025-02-13	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.56	0.0	0.03	17.65	0.01	2.406	6.96	0.43	3.0	97.0	0.0	1.89	1.42	0.31	0.80	1.63	8772	540	3	0	0	0	4422	logfile
✔	6QJH	4563	2025-02-10	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.60	0.0	0.05	15.37	0.00	2.600	1.49	1.96	1.8	98.2	0.0	-2.34	1.52	0.31	0.77	2.67	1302	177	3	0	0	0	0	logfile
✔	6QJP	4565	2025-02-10	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.002	0.60	0.0	0.05	12.51	0.00	2.600	7.52	3.92	0.0	100.0	0.0	-2.97	1.60	0.31	0.71	2.85	816	105	3	0	0	0	0	logfile
✔	7RTN	24684	2025-02-11	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.004	0.61	0.0	0.04	17.08	0.00	2.551	5.42	3.24	5.6	94.4	0.0	1.13	0.37	0.31	0.79	3.03	6018	810	3	0	0	0	0	logfile
✔	7WNZ	32636	2025-02-13	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.005	0.69	0.0	0.05	12.42	0.00	2.445	10.03	0.64	13.7	86.3	0.0	-5.82	0.51	0.31	0.67	5.22	9300	650	10	0	0	0	4780	logfile
✔	8Q9J	18283	2025-02-11	2023-08-20	2.96	2.81	3.01	2.7	0.011	1.86	0.0	0.09	10.83	0.01	2.532	0.00	0.00	1.2	98.8	0.0	-1.24	0.26	0.75	6.29	2.9	0.003	0.57	0.0	0.05	15.82	0.00	2.485	1.91	1.56	2.3	97.7	0.0	-1.60	1.20	0.31	0.84	5.86	6822	438	6	0	0	0	3480	logfile
✔	8TiB	41283	2025-02-10	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.50	0.0	0.04	16.68	0.00	2.487	6.77	5.10	5.2	94.6	0.3	-0.75	0.26	0.31	0.87	1.67	2667	393	3	0	0	0	0	logfile

• ← previous
• Page 3 of 255
• next →