Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DRo	27679	2025-02-11	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.79	0.0	0.04	13.75	0.01	2.521	17.91	0.13	8.3	91.7	0.0	-2.83	2.64	0.45	0.52	—	6642	814	2	0	0	0	0	logfile
✔	8X5Y	38075	2025-02-10	2023-11-20	3.0	3.88	3.52	3.9	0.013	0.90	0.0	0.05	14.80	0.01	2.346	8.21	0.40	7.5	92.5	0.0	-0.78	0.38	0.58	2.00	3.9	0.003	0.76	0.0	0.04	17.17	0.00	2.614	9.07	2.81	6.0	94.0	0.0	0.09	0.29	0.32	0.52	1.22	2292	274	2	0	1	0	0	logfile
✔	8ENQ	28276	2025-02-11	2022-09-30	3.6	3.97	3.73	4.4	0.004	0.77	0.0	0.05	13.93	0.00	2.257	14.40	0.00	0.3	99.7	0.0	1.45	0.35	0.32	1.15	4.2	0.004	0.92	0.0	0.05	15.78	0.00	2.503	22.21	1.87	10.7	89.3	0.0	-3.91	1.95	0.47	0.52	3.27	5593	777	7	0	0	0	0	logfile
✔	3JC2	3245	2025-02-11	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.003	0.88	0.0	0.04	17.26	0.00	2.574	12.43	1.95	7.9	91.5	0.6	-1.46	2.33	0.23	0.52	1.58	3911	482	4	0	32	0	0	logfile
✔	8R68	18948	2025-02-10	2023-11-21	3.6	3.73	3.56	3.7	0.003	0.65	0.0	0.04	13.09	0.01	2.228	17.63	0.30	5.6	94.4	0.0	-1.70	0.53	0.52	1.77	3.7	0.003	0.74	0.0	0.04	15.62	0.00	2.578	12.64	1.79	7.4	92.6	0.0	-1.93	1.82	0.54	0.52	0.97	3241	391	1	0	0	0	0	logfile
✔	7URM	26714	2025-02-10	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.72	0.01	2.028	23.68	0.00	0.0	0.0	0.0	—	1.30	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	8JVM	36677	2025-02-11	2023-06-28	3.86	4.13	3.89	3.9	0.006	1.08	1.0	0.06	14.54	0.01	2.138	27.03	1.75	16.3	82.1	1.6	-3.56	0.64	0.54	0.94	3.9	0.004	0.89	0.0	0.05	16.70	0.01	2.496	19.19	2.76	13.4	86.0	0.6	-3.18	1.22	0.64	0.53	0.77	3726	498	3	0	0	0	0	logfile
✔	7oTi	13060	2025-02-13	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.004	0.92	0.0	0.05	14.38	0.01	2.417	21.71	0.00	7.9	91.8	0.3	-1.88	1.77	0.53	0.53	—	9171	1182	1	0	0	0	0	logfile
✔	7JLX	22383	2025-02-10	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.88	0.0	0.05	7.64	0.00	2.240	3.38	0.00	18.9	80.5	0.6	-3.12	2.45	0.48	0.54	—	3288	664	4	0	0	0	0	logfile
✔	7WoG	32651	2025-02-11	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.05	10.93	0.01	2.441	16.02	0.00	13.6	86.4	0.0	-2.77	0.94	0.53	0.54	—	3362	433	3	0	0	0	0	logfile
✔	8K0B	36759	2025-02-11	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	2.0	0.004	0.79	0.0	0.04	17.55	0.00	2.415	11.73	5.27	8.3	91.7	0.0	-0.54	0.42	0.54	0.54	0.54	5689	689	1	0	0	0	0	logfile
✔	8DRQ	27681	2025-02-11	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.003	0.83	0.0	0.05	13.80	0.00	2.579	20.55	0.00	7.7	92.3	0.0	-2.95	1.70	0.41	0.54	—	3321	407	1	0	0	0	0	logfile
✔	9iiY	60609	2025-02-11	2024-06-21	3.0	3.31	3.14	3.4	0.003	0.79	0.0	0.08	21.55	0.00	2.103	19.24	0.36	9.0	91.0	0.0	-3.11	0.48	0.46	0.64	3.4	0.004	0.92	0.0	0.08	21.73	0.00	2.331	19.33	5.52	13.3	86.7	0.0	-3.21	0.52	0.52	0.54	1.15	5943	620	3	43	0	0	0	logfile
✔	8BC1	15959	2025-02-13	2022-10-14	2.93	3.48	2.73	3.5	0.002	0.46	0.0	0.04	10.38	0.00	2.030	7.96	3.43	2.9	97.1	0.0	1.53	0.38	0.52	1.52	3.5	0.003	0.76	0.0	0.04	15.57	0.01	2.205	14.47	3.00	3.3	96.7	0.0	0.76	1.04	0.39	0.54	1.26	8684	1054	4	0	6	0	0	logfile
✔	7UBB	26437	2025-02-12	2022-03-14	4.5	5.42	4.95	5.3	0.002	0.68	0.0	0.04	14.32	0.00	2.231	14.38	0.00	0.9	99.1	0.0	-1.04	0.40	0.59	—	5.3	0.003	0.73	0.0	0.05	15.05	0.00	2.380	11.84	0.00	4.5	95.5	0.0	-2.48	1.43	0.38	0.55	—	7448	896	8	0	0	0	0	logfile
✔	8UBV	42106	2025-02-11	2023-09-25	4.1	4.24	4.04	4.1	0.005	1.00	0.0	0.05	17.20	0.00	1.956	24.13	3.88	16.0	83.9	0.1	-3.69	0.64	0.57	—	4.1	0.004	0.83	0.0	0.05	17.29	0.00	2.400	16.14	3.75	13.7	86.3	0.0	-3.37	1.24	0.65	0.55	—	6603	852	4	0	0	0	0	logfile
✔	8ZL9	60223	2025-02-11	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✔	8ZL9	38897	2025-02-11	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✔	7WGC	32483	2025-02-11	2021-12-28	3.6	3.85	—	3.8	0.003	0.63	0.0	0.04	14.72	0.00	2.191	10.26	0.00	3.8	96.2	0.0	-0.11	0.56	0.55	1.21	3.8	0.003	0.63	0.0	0.04	16.02	0.00	2.556	8.62	1.14	4.6	95.4	0.0	0.21	0.36	0.56	0.55	1.17	6527	795	4	0	5	0	0	logfile
✔	7U13	26276	2025-02-11	2022-02-19	2.9	3.67	—	4.2	0.018	2.43	0.0	0.07	19.23	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.005	1.05	0.0	0.06	17.69	0.00	2.532	13.63	5.77	12.3	87.7	0.0	-3.97	2.92	0.34	0.56	1.15	3456	405	6	0	12	0	0	logfile

• ← previous
• Page 3 of 255
• next →