Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PLA	13486	2025-02-13	2021-08-30	3.04	4.14	—	3.1	0.008	1.08	0.0	0.09	26.24	0.00	2.216	9.66	0.26	3.3	96.7	0.0	-0.03	0.74	0.61	1.97	3.1	0.003	0.61	0.0	0.03	24.51	0.00	2.464	10.20	2.07	3.7	96.3	0.0	0.90	0.88	0.84	0.80	1.38	8701	437	4	244	0	0	0	logfile
✔	7LV8	23529	2025-02-14	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.12	0.00	2.205	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.004	0.57	0.0	0.03	27.15	0.00	2.510	7.92	1.67	2.5	97.5	0.0	2.46	0.51	0.70	0.79	0.96	10651	764	10	242	0	0	0	logfile
✔	6TMi	10522	2025-02-14	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.003	0.63	0.0	0.03	17.30	0.00	2.324	7.81	2.14	7.3	92.7	0.0	0.91	1.45	0.53	0.80	1.70	9606	605	5	0	0	0	4842	logfile
✔	8EX9	28655	2025-02-11	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	23.86	0.00	2.499	11.21	3.97	5.6	94.4	0.0	-0.74	0.24	0.62	0.72	4.25	4199	166	4	139	0	0	0	logfile
✔	8A8J	15231	2025-02-11	2022-06-23	3.1	3.35	3.16	3.3	0.005	0.71	0.0	0.04	19.60	0.00	2.009	4.14	0.19	4.4	95.6	0.0	0.13	0.72	0.84	3.07	3.3	0.002	0.50	0.0	0.03	19.73	0.00	2.043	3.73	1.15	2.8	97.2	0.0	1.21	0.26	0.70	0.84	2.85	6159	682	6	38	4	0	0	logfile
✔	8CoM	16777	2025-02-14	2023-02-28	3.3	3.62	3.41	3.7	0.004	0.57	0.0	0.03	28.54	0.00	2.228	8.93	0.34	1.7	98.3	0.0	2.02	0.70	0.82	1.34	3.7	0.004	0.59	0.0	0.03	28.52	0.00	2.500	7.79	2.93	1.7	98.3	0.0	1.99	0.91	0.70	0.83	1.30	10705	708	10	254	0	0	0	logfile
✔	7RX5	24725	2025-02-13	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.32	0.0	0.03	12.78	0.00	2.693	2.28	0.00	0.0	100.0	0.0	5.58	0.18	0.70	0.87	2.85	9120	1160	40	0	0	0	0	logfile
✔	7ZJ2	14739	2025-02-11	2022-04-08	3.32	3.56	—	3.6	0.014	2.21	0.0	0.08	15.29	0.01	2.548	0.00	0.00	2.3	97.7	0.0	-3.75	0.47	0.78	4.64	3.6	0.005	1.29	1.0	0.03	16.64	0.00	2.344	9.84	7.18	1.7	98.3	0.0	-3.55	1.41	0.43	0.76	4.96	3792	540	12	0	0	0	0	logfile
✔	8G8E	29846	2025-02-10	2023-02-17	4.2	7.38	5.01	5.9	0.004	0.73	0.0	0.04	28.39	0.00	2.277	15.90	0.79	1.5	98.5	0.0	0.35	0.81	0.66	—	6.0	0.004	0.63	0.0	0.03	27.94	0.00	2.436	15.44	0.00	2.9	97.1	0.0	0.35	1.83	0.91	0.84	—	2464	140	3	64	0	0	0	logfile
✔	8J7R	36046	2025-02-11	2023-04-28	3.7	3.03	3.63	3.4	0.010	1.34	0.0	0.13	24.43	0.00	2.220	9.29	6.85	2.5	97.5	0.0	-0.13	0.69	0.76	0.98	3.0	0.003	0.59	0.0	0.03	22.77	0.00	2.501	9.57	4.11	2.1	97.9	0.0	2.59	1.40	0.72	0.80	1.58	4034	238	3	97	3	1	0	logfile
✔	8G3K	29700	2025-02-10	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.002	0.47	0.0	0.03	16.63	0.00	2.600	4.59	1.23	0.4	99.6	0.0	4.75	1.11	0.46	0.83	4.89	2244	285	2	0	0	0	0	logfile
✔	8HR5	34958	2025-02-12	2022-12-14	3.73	4.01	3.70	4.0	0.004	0.67	0.0	0.05	22.93	0.00	2.191	12.34	3.37	5.6	94.4	0.0	0.07	0.69	0.72	2.02	4.0	0.003	0.57	0.0	0.03	22.61	0.00	2.313	6.92	3.85	3.1	96.9	0.0	2.11	1.29	0.70	0.73	1.25	7595	711	5	123	0	0	0	logfile
✔	8SRo	40736	2025-02-11	2023-05-05	3.3	3.43	3.26	3.4	0.003	0.56	0.0	0.03	26.26	0.02	2.348	8.41	0.90	5.3	94.7	0.0	-1.78	0.66	0.78	3.49	3.4	0.004	0.57	0.0	0.03	25.91	0.00	2.543	7.30	2.69	6.5	93.5	0.0	-0.70	0.91	0.65	0.78	2.83	4132	345	8	72	0	0	0	logfile
✔	8SRP	40737	2025-02-13	2023-05-05	3.7	3.93	3.67	3.7	0.004	0.66	0.0	0.03	28.75	0.01	2.262	9.34	0.47	6.5	93.5	0.0	-1.47	0.74	0.72	2.00	3.7	0.004	0.63	0.0	0.03	28.52	0.00	2.482	10.13	3.27	7.6	92.4	0.0	-0.44	1.24	0.74	0.72	2.86	9516	849	14	214	0	0	0	logfile
✔	7CR0	30443	2025-02-12	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.58	0.0	0.03	15.48	0.00	2.508	5.21	3.10	2.8	97.2	0.0	2.97	0.54	0.58	0.82	2.61	8188	1004	4	0	0	0	0	logfile
✔	8FPG	29363	2025-02-14	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.03	16.22	0.00	2.555	3.84	1.94	3.5	96.5	0.0	4.48	0.29	0.58	0.83	3.95	10674	1348	20	0	4	187	0	logfile
✔	8YBK	39120	2025-02-14	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.57	0.0	0.03	27.80	0.00	2.539	4.85	2.41	1.6	98.4	0.0	2.87	1.11	0.79	0.83	2.65	10261	708	10	228	0	0	0	logfile
✔	8W35	43762	2025-02-10	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.002	0.47	0.0	0.03	20.23	0.00	2.570	2.90	1.00	2.2	97.8	0.0	1.54	0.39	0.64	0.75	2.79	2611	234	3	34	0	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	7N0K	24107	2025-02-11	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.62	0.0	0.03	19.47	0.00	2.617	7.08	5.41	1.8	98.2	0.0	3.26	0.68	0.60	0.76	0.96	5154	626	2	0	0	0	0	logfile

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