Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6AYG	7020	2025-02-14	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.60	0.0	0.04	10.48	0.00	2.541	1.20	0.00	4.6	95.4	0.0	1.19	0.84	0.84	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	6oR5	9032	2025-02-14	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.66	0.0	0.04	10.21	0.00	2.507	1.21	0.00	16.9	83.1	0.0	-2.12	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	9GG0	51319	2025-02-10	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.55	0.0	0.05	15.90	0.00	2.567	1.23	2.20	2.5	97.5	0.0	-2.13	0.33	0.39	0.88	5.78	2385	321	3	0	0	0	0	logfile
✔	8GGP	40016	2025-02-10	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.004	0.51	0.0	0.04	13.78	0.00	2.633	1.24	2.58	1.4	98.6	0.0	2.34	0.24	0.52	0.85	3.29	2075	280	2	0	1	0	0	logfile
✔	8FMY	29300	2025-02-14	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.034	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.004	0.61	0.0	0.04	14.25	0.00	2.644	1.24	0.28	3.4	96.6	0.0	0.83	1.10	0.84	0.84	3.85	9597	1260	3	0	0	0	0	logfile
✔	9JSU	61783	2025-02-11	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.55	0.0	0.05	13.91	0.00	2.696	1.25	0.00	2.8	97.2	0.0	-3.10	1.17	0.52	0.92	8.57	4040	264	8	0	0	0	2000	logfile
✔	8Q9L	18285	2025-02-14	2023-08-20	2.76	2.36	2.64	2.6	0.011	1.76	0.0	0.09	11.63	0.01	2.537	0.00	0.00	1.6	98.4	0.0	-1.68	0.29	0.76	6.43	2.6	0.005	0.60	0.0	0.05	18.22	0.00	2.436	1.27	1.56	1.4	98.6	0.0	-2.29	1.47	0.37	0.86	6.88	10233	657	9	0	0	0	5220	logfile
✔	8Q9B	18275	2025-02-12	2023-08-20	3.1	3.13	2.97	3.1	0.011	1.79	0.0	0.08	10.91	0.01	2.521	0.00	0.00	4.1	95.9	0.0	-1.61	0.35	0.78	6.63	3.1	0.002	0.49	0.0	0.05	14.12	0.00	2.614	1.28	1.01	1.8	98.2	0.0	-1.13	1.31	0.38	0.86	6.09	7032	450	6	0	0	0	3588	logfile
✔	8Q9D	18277	2025-02-12	2023-08-20	3.16	2.76	3.06	3.1	0.011	1.80	0.0	0.08	9.92	0.01	2.504	0.00	0.00	5.0	95.0	0.0	-1.95	0.30	0.76	6.33	3.1	0.003	0.57	0.0	0.05	14.58	0.00	2.460	1.28	2.02	1.6	98.4	0.0	-1.00	1.31	0.36	0.85	6.17	7032	450	6	0	0	0	3588	logfile
✔	8Q8Y	18265	2025-02-12	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.003	0.56	0.0	0.05	17.91	0.00	2.410	1.31	2.07	2.1	97.9	0.0	-1.65	1.24	0.35	0.88	5.32	6896	441	6	0	0	0	3521	logfile
✔	8KF4	37198	2025-02-10	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.48	0.0	0.06	14.12	0.00	2.664	1.33	0.00	0.0	100.0	0.0	-1.06	1.19	0.38	0.91	7.82	1500	204	6	0	0	0	0	logfile
✔	8Q9E	18278	2025-02-11	2023-08-20	2.97	2.51	2.93	2.7	0.011	1.89	2.0	0.11	11.77	0.01	2.528	0.59	1.32	1.9	98.1	0.0	-1.47	0.25	0.73	5.90	2.7	0.003	0.61	0.0	0.05	17.74	0.00	2.490	1.33	0.79	1.7	98.3	0.0	-1.40	1.39	0.34	0.84	4.55	6768	432	6	0	0	0	3456	logfile
✔	8G17	29664	2025-02-14	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.69	0.0	0.05	15.89	0.01	2.419	1.36	1.52	3.6	96.4	0.0	0.43	1.23	0.72	0.87	6.92	10016	1336	4	0	0	0	0	logfile
✔	9HBB	52014	2025-02-12	2024-11-06	3.0	3.19	2.93	3.2	0.011	1.88	0.0	0.09	10.83	0.01	2.495	0.28	0.00	7.2	92.8	0.0	-1.24	0.42	0.82	6.08	3.2	0.003	0.56	0.0	0.05	15.54	0.00	2.476	1.41	2.27	3.4	96.6	0.0	-1.67	1.40	0.44	0.85	5.16	7074	456	6	0	0	0	3606	logfile
✔	8AZ2	15730	2025-02-10	2022-09-05	3.4	3.30	3.43	3.7	0.003	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.004	0.61	0.0	0.05	11.42	0.00	2.381	1.41	1.25	2.5	97.5	0.0	-3.04	0.47	0.49	0.86	5.92	2935	395	30	0	15	0	0	logfile
✔	7RXB	24727	2025-02-13	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.56	0.0	0.04	14.86	0.00	2.607	1.44	0.50	4.1	95.9	0.0	0.31	0.28	0.63	0.88	3.05	8506	1096	4	0	8	0	0	logfile
✔	7UL5	26592	2025-02-10	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.002	0.50	0.0	0.04	13.41	0.00	2.622	1.47	1.87	1.4	98.6	0.0	2.82	0.30	0.65	0.86	3.35	2773	371	2	0	0	0	0	logfile
✔	8oH2	16876	2025-02-11	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.004	0.62	0.0	0.05	18.01	0.00	2.210	1.49	2.55	0.5	99.5	0.0	-2.32	1.10	0.50	0.89	6.19	3702	468	102	0	72	30	0	logfile
✔	6QJH	4563	2025-02-10	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.60	0.0	0.05	15.37	0.00	2.600	1.49	1.96	1.8	98.2	0.0	-2.34	1.52	0.31	0.77	2.67	1302	177	3	0	0	0	0	logfile
✔	7Xo3	33335	2025-02-10	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.005	0.62	0.0	0.05	16.17	0.00	2.630	1.50	1.89	15.0	85.0	0.0	-1.91	0.39	0.50	0.85	5.72	2598	378	6	0	0	0	0	logfile

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