Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DZP	27804	2025-02-13	2022-08-08	2.71	2.09	2.70	1.9	0.004	0.68	0.0	0.05	13.62	0.01	2.216	5.26	0.11	3.6	96.4	0.0	-0.46	0.78	0.78	3.63	1.8	0.004	0.58	0.0	0.04	15.45	0.00	2.506	5.08	2.35	4.0	96.0	0.0	0.77	0.95	0.80	0.82	3.60	8657	1120	6	0	1	0	0	logfile
✔	7XA3	33086	2025-02-13	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.60	0.0	0.04	13.78	0.00	2.522	6.59	2.57	2.9	97.1	0.0	1.68	1.15	0.77	0.78	2.88	9591	1220	6	0	0	0	0	logfile
✔	7WiG	32529	2025-02-13	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.30	0.00	2.192	6.75	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.57	0.0	0.04	15.37	0.00	2.518	4.78	1.84	2.4	97.6	0.0	1.49	0.34	0.80	0.80	3.27	8931	1139	6	0	1	0	0	logfile
✔	7RPo	24618	2025-02-14	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.72	0.0	0.04	18.38	0.00	2.043	9.33	0.00	8.5	91.5	0.0	-2.10	1.71	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	8Y6K	38989	2025-02-11	2024-02-02	3.94	2.95	4.01	2.0	0.006	0.97	0.0	0.05	15.52	0.01	2.136	21.47	0.33	4.8	95.2	0.0	-0.44	0.66	0.59	0.59	1.8	0.003	0.73	0.0	0.04	17.77	0.00	2.406	13.77	3.11	4.4	95.6	0.0	0.42	0.54	0.66	0.59	0.66	5872	741	2	0	3	0	0	logfile
✔	7SCK	25037	2025-02-14	2021-09-28	2.8	2.26	2.83	2.1	0.005	0.61	0.0	0.05	13.39	0.00	1.744	9.55	0.36	5.5	94.5	0.0	-0.14	0.75	0.73	3.35	1.8	0.004	0.71	0.0	0.05	15.49	0.00	2.139	12.07	2.07	4.7	95.2	0.1	-0.58	0.56	0.77	0.77	2.82	10250	1240	8	2	9	0	0	logfile
✔	8XZH	38796	2025-02-13	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.004	0.61	0.0	0.04	16.43	0.00	2.475	5.74	2.65	2.3	97.7	0.0	1.04	0.45	0.78	0.85	4.07	9048	1159	6	0	0	0	0	logfile
✔	8P79	17522	2025-02-11	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.004	0.67	0.0	0.04	15.95	0.00	2.582	6.00	0.72	1.3	98.5	0.2	1.78	1.23	0.68	0.77	6.48	5256	630	6	0	1	180	0	logfile
✔	7SQG	25384	2025-02-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	17.27	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.003	0.58	0.0	0.04	17.03	0.00	2.545	7.17	1.74	3.0	97.0	0.0	1.52	0.96	0.81	0.82	3.42	6630	810	6	0	12	0	0	logfile
✔	8Q98	18271	2025-02-12	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.53	0.0	0.05	15.06	0.00	2.501	1.14	0.51	0.9	99.1	0.0	-0.39	1.18	0.43	0.90	7.96	7032	450	6	0	0	0	3588	logfile
✔	8SXU	40859	2025-02-11	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	1.8	0.003	0.77	0.0	0.04	18.32	0.00	2.438	14.47	4.68	5.7	94.3	0.0	-0.26	0.66	0.66	0.65	0.42	6207	726	2	10	0	0	0	logfile
✔	8UMC	42375	2025-02-12	2023-10-17	2.5	2.12	2.52	1.9	0.005	0.68	0.0	0.05	17.53	0.01	2.045	9.69	1.16	2.9	96.9	0.1	-0.80	0.82	0.81	3.65	1.8	0.005	0.68	0.0	0.05	18.01	0.01	2.138	9.76	3.49	2.8	97.2	0.0	0.10	0.38	0.82	0.81	3.19	7198	890	6	0	2	0	0	logfile
✔	7UWM	26836	2025-02-12	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	17.88	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.61	0.0	0.04	17.77	0.00	2.508	5.91	3.51	2.6	97.4	0.0	-0.60	0.23	0.80	0.79	2.10	7972	967	9	0	9	0	0	logfile
✔	7S8P	24900	2025-02-12	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.74	0.00	2.183	3.18	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.64	0.0	0.04	15.36	0.00	2.487	1.91	3.73	5.1	94.9	0.0	0.31	0.36	0.84	0.84	3.97	8093	1089	6	0	1	0	0	logfile
✔	8E9X	27967	2025-02-12	2022-08-27	2.7	2.10	2.72	1.9	0.005	0.55	0.0	0.04	12.41	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.003	0.55	0.0	0.04	14.99	0.00	2.591	5.85	2.41	3.5	96.5	0.0	0.79	0.34	0.80	0.82	3.67	8380	1109	6	0	1	0	0	logfile
✔	7MKM	23899	2025-02-11	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.04	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	1.9	0.003	0.79	0.0	0.04	14.70	0.00	2.506	7.53	1.44	4.8	95.2	0.0	-2.12	0.57	0.53	0.62	1.70	3192	406	4	0	1	0	0	logfile
✔	7T6U	25728	2025-02-13	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	1.9	0.003	0.64	0.0	0.04	16.08	0.00	2.541	7.09	3.67	1.8	98.2	0.0	0.36	1.20	0.78	0.81	3.16	9033	1152	7	0	2	0	0	logfile
✔	8P6Y	17511	2025-02-11	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.003	0.60	0.0	0.04	16.90	0.00	2.163	3.82	0.72	0.8	99.0	0.2	2.00	0.74	0.68	0.85	6.15	5266	630	7	0	3	158	0	logfile
✔	8Q9F	18279	2025-02-11	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	16.14	0.00	2.429	2.04	0.28	2.2	97.8	0.0	-2.19	1.79	0.43	0.85	7.00	6390	414	6	0	0	0	3258	logfile
✔	7VUH	32128	2025-02-13	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.68	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.003	0.63	0.0	0.04	15.88	0.00	2.529	12.04	2.44	6.2	93.8	0.0	-1.12	0.38	0.71	0.73	2.28	8302	1042	6	0	1	0	0	logfile

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