Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7R9E	24324	2025-02-12	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.002	0.60	0.0	0.04	9.51	0.00	2.439	7.25	0.25	5.6	94.4	0.0	-0.09	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	7LRE	23496	2025-02-12	2021-02-16	2.76	3.85	2.75	3.2	0.003	0.44	0.0	0.04	7.41	0.00	2.301	3.48	0.22	1.6	98.4	0.0	2.20	0.80	0.83	4.37	3.2	0.002	0.46	0.0	0.04	9.77	0.00	2.632	3.17	0.66	1.6	98.2	0.2	2.36	1.11	0.82	0.89	3.60	8144	1004	4	0	2	0	0	logfile
✔	8H3U	32828	2025-02-11	2022-10-09	4.7	3.74	—	2.6	0.002	0.56	0.0	0.04	7.77	0.00	2.279	8.94	1.98	5.8	94.1	0.1	-3.28	0.52	0.42	—	2.2	0.003	0.66	0.0	0.05	9.78	0.00	2.468	13.61	0.00	9.4	90.6	0.0	-1.65	0.87	0.53	0.41	—	6383	818	2	0	0	0	0	logfile
✔	6oR5	9032	2025-02-14	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.66	0.0	0.04	10.21	0.00	2.507	1.21	0.00	16.9	83.1	0.0	-2.12	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	5V4S	8633	2025-02-14	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.004	0.63	0.0	0.04	10.27	0.00	2.359	10.97	0.00	2.9	97.1	0.0	2.95	0.85	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	8AWT	15696	2025-02-10	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.003	0.50	0.0	0.04	10.36	0.00	2.302	0.00	0.00	0.4	99.6	0.0	-4.02	1.02	0.53	0.89	7.01	1910	260	20	0	10	0	0	logfile
✔	6AYG	7020	2025-02-14	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.60	0.0	0.04	10.48	0.00	2.541	1.20	0.00	4.6	95.4	0.0	1.19	0.84	0.84	0.79	—	10456	1756	4	0	0	0	0	logfile
✔	6PZC	20534	2025-02-12	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.004	0.73	0.0	0.05	10.62	0.00	2.385	9.85	0.00	5.8	94.1	0.1	0.13	1.55	0.70	0.77	—	7456	1173	1	0	0	0	0	logfile
✔	9G69	51096	2025-02-11	2024-07-18	4.84	4.50	4.73	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.007	1.14	0.0	0.05	10.65	0.01	2.337	12.27	0.00	28.1	71.6	0.3	-5.07	1.20	0.73	0.75	—	5053	1028	5	0	1	0	0	logfile
✔	9BCS	44436	2025-02-11	2024-04-09	4.4	4.63	4.45	4.5	0.002	0.57	0.0	0.04	12.17	0.00	2.221	2.87	0.57	5.3	94.7	0.0	-0.54	0.60	0.78	—	4.5	0.003	0.67	0.0	0.04	10.68	0.00	2.257	2.66	0.00	8.9	91.1	0.0	0.20	0.52	0.62	0.79	—	5916	1038	4	0	2	0	0	logfile
✔	7LH3	23335	2025-02-14	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.59	0.0	0.04	10.70	0.00	2.520	8.72	0.00	3.0	97.0	0.0	1.97	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	9B5X	44228	2025-02-14	2024-03-22	4.16	4.88	4.31	4.2	0.002	0.44	0.0	0.04	9.37	0.00	2.006	2.74	1.51	1.9	98.1	0.0	0.97	0.89	0.81	—	4.2	0.002	0.53	0.0	0.04	10.90	0.00	1.912	6.17	0.00	2.4	97.6	0.0	1.68	1.28	0.91	0.84	—	9527	1207	5	0	4	0	0	logfile
✔	7WoG	32651	2025-02-11	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.05	10.93	0.01	2.441	16.02	0.00	13.6	86.4	0.0	-2.77	0.94	0.53	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7WLB	32580	2025-02-14	2022-01-12	4.1	3.63	—	3.5	0.002	0.44	0.0	0.04	8.68	0.00	2.205	6.88	3.92	4.5	95.5	0.0	-4.05	0.74	0.72	—	3.5	0.003	0.70	0.0	0.04	10.94	0.00	2.400	12.46	0.00	5.5	94.5	0.0	-0.60	1.42	0.75	0.75	—	10193	1327	2	0	0	0	0	logfile
✔	5A6F	3063	2025-02-13	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.8	0.003	0.60	0.0	0.04	10.97	0.00	2.297	8.40	0.00	6.8	93.2	0.0	-1.01	0.98	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	8J46	35971	2025-02-10	2023-04-19	3.66	4.32	3.59	4.1	0.004	0.77	0.0	0.05	9.52	0.01	2.463	0.54	0.00	0.9	99.1	0.0	2.69	0.47	0.72	2.69	4.1	0.003	0.58	0.0	0.04	10.97	0.00	2.512	3.78	2.88	2.0	98.0	0.0	3.63	1.11	0.48	0.77	1.61	2158	362	1	0	0	0	0	logfile
✔	7R9o	24330	2025-02-12	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.002	0.58	0.0	0.04	11.05	0.00	2.427	4.79	0.49	3.4	96.6	0.0	-0.21	3.43	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	8W77	37336	2025-02-10	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.003	0.55	0.0	0.04	11.07	0.00	2.638	2.15	2.22	2.0	98.0	0.0	3.96	0.87	0.57	0.78	2.98	1601	260	1	0	0	0	0	logfile
✔	5oH0	3809	2025-02-11	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.029	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.004	0.61	0.0	0.04	11.09	0.00	2.575	4.40	0.00	3.9	96.1	0.0	-2.45	0.66	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	6MET	9109	2025-02-14	2018-09-07	4.5	4.68	4.22	4.4	0.007	1.08	0.0	0.07	13.54	0.01	1.985	12.02	1.37	8.0	91.5	0.5	-4.19	0.58	0.54	—	4.4	0.003	0.79	0.0	0.05	11.13	0.00	2.377	10.84	0.00	7.2	92.7	0.1	-1.86	1.22	0.68	0.80	—	8911	1074	14	0	32	0	0	logfile

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