Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9F6P	50237	2025-02-11	2024-05-02	3.7	3.92	3.71	4.0	0.004	0.93	0.0	0.05	18.01	0.01	2.090	19.52	2.05	2.7	97.3	0.0	1.39	0.48	0.70	1.10	4.0	0.004	0.81	0.0	0.04	17.78	0.00	2.167	15.41	6.15	4.2	95.8	0.0	1.13	0.79	0.53	0.74	0.37	3720	482	2	0	1	0	0	logfile
✔	8YZK	39696	2025-02-11	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.6	0.004	0.76	0.0	0.04	18.29	0.00	2.463	16.15	6.13	9.5	90.5	0.0	-1.02	0.90	0.69	0.63	0.38	6470	866	4	0	0	0	0	logfile
✔	7XUN	33475	2025-02-11	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.002	0.66	0.0	0.04	15.86	0.00	2.591	9.01	2.12	4.2	95.8	0.0	-0.22	0.43	0.73	0.77	0.38	5591	741	1	0	0	0	0	logfile
✔	7RTU	24689	2025-02-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.58	0.0	0.04	16.13	0.00	2.479	5.86	1.88	2.5	97.5	0.0	4.23	0.33	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	8iDC	35363	2025-02-14	2023-02-12	3.9	5.12	3.90	3.9	0.004	1.02	0.0	0.05	10.68	0.01	2.221	5.95	0.00	6.9	92.9	0.2	-3.33	0.77	0.83	-0.28	3.9	0.002	0.72	0.0	0.04	12.21	0.00	2.506	9.71	0.75	5.7	94.2	0.1	-1.34	0.39	0.77	0.83	0.39	9701	1342	5	0	0	0	0	logfile
✔	7W6P	32331	2025-02-12	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.73	0.0	0.04	15.73	0.00	2.510	14.78	2.55	6.0	94.0	0.0	-0.82	1.94	0.32	0.26	0.39	8408	1083	6	0	1	0	0	logfile
✔	8SXU	40859	2025-02-11	2023-05-24	3.66	2.81	3.70	3.8	0.003	0.57	0.0	0.04	18.38	0.00	2.187	15.99	0.15	5.4	94.6	0.0	-0.09	0.64	0.66	0.42	1.8	0.003	0.77	0.0	0.04	18.32	0.00	2.438	14.47	4.68	5.7	94.3	0.0	-0.26	0.66	0.66	0.65	0.42	6207	726	2	10	0	0	0	logfile
✔	7BW8	30230	2025-02-11	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.42	0.01	2.383	16.35	4.87	11.8	88.2	0.0	-3.19	1.53	0.68	0.63	0.43	6021	737	3	0	0	0	0	logfile
✔	6XWQ	10635	2025-02-13	2020-01-24	3.41	4.27	—	4.0	0.003	0.61	0.0	0.04	13.42	0.00	2.171	10.53	0.00	3.5	96.2	0.2	-2.80	0.73	0.80	0.22	4.0	0.003	0.75	0.0	0.04	15.58	0.00	2.550	11.84	2.19	2.6	97.4	0.0	1.23	1.16	0.72	0.84	0.43	9572	1281	6	0	0	0	0	logfile
✔	8Z7X	39831	2025-02-10	2024-04-21	3.36	3.51	3.34	3.5	0.006	0.80	0.0	0.05	13.91	0.00	2.198	8.66	0.00	4.0	96.0	0.0	-0.59	0.52	0.70	1.15	3.5	0.004	0.65	0.0	0.04	15.66	0.00	2.560	10.19	2.28	4.0	96.0	0.0	0.53	0.99	0.51	0.72	0.43	2955	376	2	0	1	0	0	logfile
✔	8YH6	39282	2025-02-13	2024-02-27	3.62	4.12	—	3.7	0.012	1.43	0.0	0.09	14.43	0.03	2.215	12.85	0.94	4.9	95.0	0.1	-2.37	0.57	0.50	0.66	3.8	0.004	0.84	0.0	0.05	16.44	0.00	2.467	17.46	3.15	4.7	95.3	0.0	-0.24	1.51	0.64	0.65	0.44	8706	1104	6	0	1	0	0	logfile
✔	8RNU	19395	2025-02-14	2024-01-11	3.4	5.41	2.49	3.9	0.010	1.04	0.0	0.05	17.19	0.01	2.104	28.22	0.32	10.1	89.9	0.0	-2.17	0.62	0.30	0.31	3.9	0.004	0.77	0.0	0.05	17.91	0.01	2.426	24.31	3.45	10.2	89.8	0.0	-2.07	0.65	0.65	0.39	0.44	10848	1320	12	0	0	0	0	logfile
✔	8YoY	39460	2025-02-11	2024-03-14	3.21	4.39	3.38	4.0	0.003	0.50	0.0	0.04	14.42	0.00	2.189	7.69	0.00	3.7	96.3	0.0	-1.35	0.72	0.43	0.88	3.9	0.003	0.78	0.0	0.05	16.13	0.00	2.505	18.32	4.00	5.4	94.5	0.2	-1.18	1.49	0.85	0.74	0.44	5081	653	2	0	0	0	0	logfile
✔	8HRU	34980	2025-02-11	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.0	0.005	0.89	0.0	0.05	17.95	0.00	2.486	23.65	2.85	5.7	94.3	0.0	-0.51	0.73	0.76	0.71	0.45	4870	597	1	0	0	0	0	logfile
✔	8UG8	42217	2025-02-11	2023-10-05	3.79	3.70	3.73	3.6	0.003	0.53	0.0	0.04	17.04	0.00	2.257	9.77	0.00	2.0	98.0	0.0	1.88	0.52	0.75	0.86	3.6	0.005	1.22	2.0	0.05	17.58	0.01	2.280	18.45	4.73	2.5	97.5	0.0	1.27	0.77	0.52	0.75	0.45	5916	750	2	0	0	0	0	logfile
✔	7P1i	13161	2025-02-11	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.4	0.004	1.08	0.0	0.05	15.35	0.00	2.456	20.49	4.07	6.6	93.4	0.0	0.36	0.97	0.57	0.73	0.45	6644	884	2	0	0	0	0	logfile
✔	8KCi	37105	2025-02-14	2023-08-07	3.94	4.27	3.89	4.2	0.004	0.67	0.0	0.04	18.61	0.00	2.001	9.47	1.35	10.0	89.8	0.3	-0.20	0.63	0.70	0.56	4.2	0.003	0.67	0.0	0.04	18.60	0.00	2.071	7.39	3.97	9.5	90.5	0.0	0.00	1.30	0.65	0.71	0.45	9515	1203	2	0	4	0	0	logfile
✔	8iDB	35362	2025-02-12	2023-02-12	3.9	4.38	3.73	4.2	0.005	1.04	0.0	0.06	11.65	0.01	2.256	5.21	0.32	5.8	93.7	0.5	-3.59	0.69	0.73	0.55	4.2	0.003	0.70	0.0	0.04	14.40	0.00	2.514	9.74	2.92	6.4	93.3	0.3	-1.18	0.42	0.70	0.75	0.45	6835	982	4	0	0	0	0	logfile
✔	8CQR	16799	2025-02-14	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.002	0.58	0.0	0.04	15.30	0.00	2.265	13.19	2.13	3.8	96.2	0.0	1.13	1.50	0.45	0.66	0.45	9708	618	6	0	0	0	5010	logfile
✔	8HRN	34979	2025-02-11	2022-12-15	3.9	4.18	3.98	4.0	0.005	0.91	0.0	0.05	17.07	0.01	2.080	24.49	0.95	3.4	96.6	0.0	-1.15	0.76	0.69	0.78	4.0	0.004	0.76	0.0	0.04	17.86	0.00	2.549	15.24	3.04	2.5	97.5	0.0	-0.18	1.57	0.76	0.69	0.45	4870	597	1	0	0	0	0	logfile

• ← previous
• Page 3 of 255
• next →