Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	8XCN	38248	2025-02-13	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.51	0.01	1.621	13.99	3.50	4.5	95.4	0.1	0.42	1.17	0.74	0.83	2.21	8601	1089	5	0	6	0	0	logfile
✔	8oKR	16930	2025-02-10	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.47	65.0	0.43	30.03	0.04	1.660	149.52	13.10	46.7	41.7	11.7	-7.76	2.19	0.64	0.89	1.68	1608	168	24	0	0	0	0	logfile
✔	7N72	24217	2025-02-13	2021-06-09	2.5	3.08	2.57	2.9	0.007	1.35	0.0	0.06	13.13	0.01	1.971	6.06	0.00	1.4	98.6	0.0	-0.87	0.72	0.85	3.04	2.9	0.003	0.85	0.0	0.04	14.18	0.00	1.667	5.40	0.80	1.8	98.2	0.0	2.10	0.43	0.68	0.84	2.90	7705	1030	2	0	11	5	0	logfile
✔	8GYX	34379	2025-02-11	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	16.07	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.003	0.68	0.0	0.04	16.72	0.00	1.668	9.79	4.08	1.7	98.3	0.0	2.69	0.61	0.52	0.78	1.60	6118	760	4	0	6	0	0	logfile
✔	7LQF	23484	2025-02-11	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.31	245.0	0.42	26.85	0.03	1.673	200.95	26.56	55.5	42.6	2.0	-9.07	2.04	0.69	0.87	3.17	5376	512	64	0	0	0	0	logfile
✔	8HAF	34587	2025-02-14	2022-10-26	3.25	2.28	3.09	2.2	0.003	0.82	0.0	0.07	16.06	0.00	1.671	7.15	0.40	2.8	97.2	0.0	0.83	0.70	0.74	2.25	2.1	0.004	0.81	0.0	0.07	16.39	0.00	1.679	6.48	3.39	3.5	96.5	0.0	0.99	0.52	0.77	0.80	2.86	9681	1167	7	0	17	0	0	logfile
✔	8VE1	43161	2025-02-11	2023-12-18	2.7	2.67	2.66	2.8	0.006	0.58	0.0	0.05	13.15	0.00	2.258	2.95	0.26	2.2	97.8	0.0	0.62	0.75	0.85	5.80	2.8	0.005	0.67	0.0	0.05	16.10	0.00	1.707	5.75	1.82	2.6	97.4	0.0	-0.31	0.89	0.76	0.88	5.28	3656	466	10	0	2	27	0	logfile
✔	7XD3	33134	2025-02-13	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.006	0.76	0.0	0.04	24.27	0.01	1.714	13.21	0.00	0.0	0.0	0.0	—	1.80	0.87	0.80	—	9062	0	2	423	28	0	0	logfile
✔	8WTN	37837	2025-02-14	2023-10-19	2.95	3.11	2.91	3.1	0.006	1.15	0.0	0.05	14.11	0.01	2.256	5.10	0.00	9.0	91.0	0.0	-5.66	0.65	0.83	3.57	3.1	0.003	0.66	0.0	0.04	15.74	0.00	1.715	5.66	2.08	8.7	91.3	0.0	0.03	0.41	0.62	0.83	2.95	9714	1228	4	0	4	0	0	logfile
✔	9FVD	50803	2025-02-14	2024-06-26	3.2	3.54	3.13	3.4	0.003	0.61	0.0	0.04	15.20	0.00	0.014	16.91	0.00	2.5	97.5	0.0	1.52	0.47	0.80	3.04	3.5	0.008	2.04	1.0	0.19	22.29	0.01	1.716	36.24	3.16	5.3	94.7	0.0	-0.29	2.28	0.43	0.72	1.68	10146	1143	8	54	0	0	0	logfile
✔	7LQE	23483	2025-02-11	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.03	242.0	0.38	26.24	0.02	1.718	134.18	25.00	31.6	68.1	0.3	-7.42	1.54	0.65	0.90	1.83	6048	576	72	0	0	0	0	logfile
✔	8K15	36786	2025-02-14	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.91	0.0	0.05	24.72	0.01	1.745	4.29	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	7XD4	33135	2025-02-13	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.006	0.79	0.0	0.04	24.53	0.01	1.749	16.03	0.00	0.0	0.0	0.0	—	1.96	0.87	0.79	—	9062	0	2	423	28	0	0	logfile
✔	7R6N	24283	2025-02-12	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.84	0.0	0.04	24.91	0.01	1.757	15.00	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	7R6M	24282	2025-02-12	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.54	0.01	1.758	13.81	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	7LQ5	23481	2025-02-12	2021-02-13	3.4	3.53	3.25	3.5	0.013	1.31	0.0	0.07	19.67	0.01	1.857	27.57	0.45	12.9	87.1	0.0	-4.95	0.75	0.77	1.16	3.5	0.004	1.01	0.0	0.05	19.21	0.01	1.771	13.75	5.58	14.2	85.8	0.0	-2.66	1.03	0.76	0.81	1.52	6843	774	6	0	24	0	0	logfile
✔	8HD6	34670	2025-02-13	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.006	0.75	0.0	0.04	25.03	0.01	1.773	20.61	0.00	0.0	0.0	0.0	—	2.17	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	7YCH	33739	2025-02-13	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.008	0.71	0.0	0.04	24.27	0.00	1.777	27.90	0.00	0.0	0.0	0.0	—	0.92	0.94	0.88	—	8661	0	3	404	4	0	0	logfile

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