Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F2o	31429	2025-02-13	2021-06-11	2.9	2.20	—	2.1	0.003	0.57	0.0	0.04	12.79	0.01	2.194	5.71	0.41	3.2	96.8	0.0	-0.75	0.70	0.68	3.19	2.0	0.003	0.68	0.0	0.04	16.03	0.00	2.409	10.80	2.95	2.7	97.3	0.0	0.53	0.65	0.75	0.77	2.70	9004	1150	6	0	0	0	0	logfile
✔	6LYY	30019	2025-02-11	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.004	0.75	0.0	0.04	15.84	0.00	2.528	8.78	5.99	4.2	95.8	0.0	0.48	1.64	0.45	0.67	1.89	4104	597	3	0	1	0	0	logfile
✔	7SJ4	25153	2025-02-11	2021-10-15	2.86	3.15	—	3.2	0.002	0.43	0.0	0.04	9.56	0.00	2.278	3.47	0.93	1.3	98.7	0.0	0.95	0.62	0.72	3.73	3.2	0.003	0.60	0.0	0.04	14.87	0.00	2.491	5.66	3.02	1.7	98.3	0.0	1.47	0.62	0.60	0.71	2.49	3909	481	4	0	0	24	0	logfile
✔	8A01	15044	2025-02-11	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	3.2	0.004	0.56	0.0	0.05	16.92	0.00	2.585	2.96	2.22	3.8	96.2	0.0	-0.47	0.26	0.48	0.88	2.74	5511	717	3	0	0	0	0	logfile
✔	3JD8	6640	2025-02-14	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	18.26	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.94	0.0	0.05	12.38	0.00	2.432	13.52	0.00	7.9	91.1	1.0	-0.94	1.24	0.57	0.72	—	8050	1133	7	0	25	0	0	logfile
✔	7YNM	33966	2025-02-11	2022-07-31	2.9	2.93	2.40	3.1	0.012	0.99	0.0	0.05	14.59	0.00	2.219	39.00	0.00	3.6	96.4	0.0	-2.80	0.45	0.70	4.24	3.1	0.004	0.67	0.0	0.05	17.65	0.00	2.538	12.54	4.94	8.9	91.1	0.0	-2.02	1.39	0.49	0.78	3.23	3528	488	12	0	8	0	0	logfile
✔	8A04	15047	2025-02-11	2022-05-26	3.2	3.28	3.22	3.3	0.004	0.60	0.0	0.05	14.53	0.00	2.113	4.31	0.00	1.5	98.5	0.0	-0.52	0.52	0.85	3.07	3.3	0.004	0.56	0.0	0.05	16.71	0.00	2.555	2.69	2.54	2.5	97.5	0.0	-0.45	0.29	0.50	0.86	3.01	5511	717	3	0	0	0	0	logfile
✔	6UAN	20708	2025-02-12	2019-09-11	3.9	4.03	—	3.9	0.007	0.95	0.0	0.06	16.09	0.01	2.256	7.56	1.03	8.1	91.9	0.0	-5.36	0.76	0.80	1.99	3.9	0.003	0.79	0.0	0.04	17.30	0.00	2.428	9.28	3.35	4.2	95.8	0.0	-1.27	1.22	0.75	0.78	1.20	7685	1007	4	0	0	0	0	logfile
✔	6JBH	9790	2025-02-13	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.97	0.0	0.05	16.22	0.00	2.359	11.61	3.09	14.5	85.5	0.0	-2.61	1.63	0.68	0.82	1.91	8592	1062	4	0	0	0	0	logfile
✔	7T6T	25727	2025-02-12	2021-12-14	3.2	2.74	—	3.3	0.011	1.55	0.0	0.10	13.22	0.01	2.223	13.63	1.16	2.0	98.0	0.0	0.19	0.68	0.80	2.07	3.3	0.003	0.68	0.0	0.04	16.81	0.00	2.542	12.03	3.88	1.8	98.2	0.0	0.14	0.68	0.67	0.82	2.20	7164	908	6	0	2	0	0	logfile
✔	8HDP	34677	2025-02-12	2022-11-05	3.2	3.72	3.07	3.5	0.003	0.76	0.0	0.08	12.51	0.00	2.006	7.86	0.57	2.7	97.3	0.0	-1.79	0.67	0.75	1.99	3.5	0.003	0.80	0.0	0.06	15.40	0.00	2.470	9.31	2.96	2.8	97.2	0.0	0.70	2.05	0.70	0.82	1.94	8282	1041	6	0	5	0	0	logfile
✔	6S3Q	10094	2025-02-14	2019-06-25	3.34	3.45	3.28	3.4	0.012	1.11	0.0	0.06	14.48	0.01	2.383	2.50	0.57	4.3	95.4	0.2	-4.53	0.66	0.86	2.79	3.4	0.002	0.59	0.0	0.04	14.79	0.00	2.569	4.53	1.81	2.1	97.9	0.0	1.49	1.15	0.64	0.85	1.42	10290	1290	6	0	21	0	0	logfile
✔	6WM0	21846	2025-02-11	2020-04-20	3.52	3.75	—	3.7	0.003	0.59	0.0	0.04	14.11	0.00	2.281	6.43	0.00	2.6	97.4	0.0	-0.89	0.74	0.81	2.63	3.7	0.003	0.62	0.0	0.05	16.04	0.00	2.521	5.58	1.88	3.6	96.4	0.0	3.06	2.37	0.73	0.81	2.45	4105	510	3	0	5	0	0	logfile
✔	6NF4	9360	2025-02-12	2018-12-18	2.98	3.35	—	3.3	0.009	1.09	0.0	0.07	13.59	0.01	2.379	2.34	0.27	3.2	96.8	0.0	0.16	0.69	0.84	3.04	3.3	0.003	0.58	0.0	0.04	15.17	0.00	2.329	5.81	2.44	3.6	96.4	0.0	4.19	1.15	0.57	0.83	1.65	6960	842	4	0	8	0	0	logfile
✔	7ETW	31303	2025-02-11	2021-05-14	4.1	4.06	—	4.0	0.009	1.21	1.0	0.08	13.70	0.01	1.843	16.06	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	4.0	0.003	0.77	0.0	0.04	11.68	0.00	2.426	7.03	0.00	5.4	94.0	0.6	0.00	3.39	0.54	0.74	—	4952	680	4	0	6	0	0	logfile
✔	6RVX	10016	2025-02-13	2019-06-03	3.61	3.75	3.53	3.8	0.006	0.99	0.0	0.05	14.07	0.01	2.261	5.00	0.29	8.0	92.0	0.0	-5.46	0.65	0.80	1.54	3.8	0.003	0.72	0.0	0.04	15.44	0.00	2.587	10.16	2.25	4.5	95.5	0.0	-0.81	0.48	0.63	0.80	1.00	9627	1290	3	0	0	0	0	logfile
✔	7T6S	25726	2025-02-13	2021-12-14	3.0	2.75	—	3.0	0.013	1.29	3.0	0.10	13.45	0.01	2.223	9.06	0.10	2.2	97.8	0.0	-0.64	0.60	0.81	3.66	3.0	0.003	0.59	0.0	0.04	15.79	0.00	2.532	7.32	2.27	2.7	97.3	0.0	-0.05	1.16	0.61	0.83	3.22	8906	1136	6	0	1	0	0	logfile
✔	8WX3	37899	2025-02-12	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.14	0.00	2.576	5.79	2.94	3.5	96.3	0.2	1.41	1.81	0.56	0.84	2.70	7498	974	2	0	0	0	0	logfile
✔	5YUD	6845	2025-02-14	2017-11-21	4.28	4.47	—	4.3	0.008	1.31	0.0	0.06	10.62	0.01	1.301	55.14	0.17	16.1	82.8	1.1	-5.50	0.76	0.74	—	4.3	0.004	0.92	0.0	0.05	14.01	0.00	2.375	17.11	0.00	10.9	88.7	0.5	-2.62	1.15	0.77	0.78	—	10510	1313	3	0	1	0	0	logfile
✔	6LZ0	30020	2025-02-11	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.11	0.01	2.126	17.43	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.004	0.78	0.0	0.04	16.54	0.00	2.566	8.58	10.19	5.1	94.9	0.0	0.63	1.28	0.42	0.68	1.56	4006	591	3	0	1	0	0	logfile

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