Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8KBY	37087	2025-02-11	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.004	0.86	0.0	0.05	15.53	0.00	2.199	11.00	6.91	17.0	83.0	0.0	-5.14	1.75	0.57	0.62	2.85	5050	830	1	0	0	0	0	logfile
✔	8iWK	35769	2025-02-12	2023-03-30	3.0	3.18	2.97	3.2	0.010	1.10	0.0	0.06	10.00	0.01	2.313	1.92	0.00	9.2	90.8	0.0	-6.57	0.65	0.83	3.72	3.2	0.003	0.64	0.0	0.04	14.10	0.00	2.581	4.24	2.28	6.4	93.6	0.0	-1.26	1.18	0.65	0.85	2.50	8479	1090	3	0	1	0	0	logfile
✔	8WXE	37904	2025-02-11	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.86	0.0	0.04	18.57	0.00	2.490	12.32	6.92	5.2	94.8	0.0	-0.23	0.93	0.56	0.73	—	4388	548	9	0	1	0	0	logfile
✔	8SMV	40603	2025-02-12	2023-04-26	2.74	3.28	2.72	3.2	0.004	0.65	0.0	0.04	12.72	0.00	2.162	1.85	0.00	3.0	97.0	0.0	0.53	0.76	0.85	3.47	3.2	0.002	0.55	0.0	0.04	15.89	0.00	2.434	3.57	1.94	2.5	97.5	0.0	0.81	1.30	0.74	0.88	2.61	8169	1034	6	0	1	0	0	logfile
✔	8WQD	37740	2025-02-11	2023-10-11	3.55	3.74	3.53	3.7	0.004	0.62	0.0	0.04	14.56	0.01	2.266	8.72	0.00	6.9	93.1	0.0	-0.78	0.67	0.83	2.91	3.7	0.004	0.55	0.0	0.04	16.72	0.00	2.534	8.82	2.00	6.9	93.1	0.0	0.42	0.31	0.67	0.83	1.94	5046	641	2	0	0	0	0	logfile
✔	8K20	36808	2025-02-13	2023-07-11	3.7	4.39	3.57	3.7	0.003	0.60	0.0	0.04	14.08	0.00	2.100	14.06	0.00	2.8	97.2	0.0	0.88	0.82	0.64	0.83	3.8	0.003	0.62	0.0	0.04	15.86	0.00	2.105	12.51	1.75	3.1	96.9	0.0	0.49	0.95	0.82	0.66	0.76	9356	1209	7	0	1	0	0	logfile
✔	8QSQ	18639	2025-02-11	2023-10-11	3.7	4.53	6.42	3.8	0.002	0.46	0.0	0.04	10.95	0.00	2.268	4.09	1.15	3.2	96.8	0.0	-1.43	0.64	0.73	0.69	3.6	0.003	0.69	0.0	0.04	14.14	0.00	2.525	15.50	1.58	3.4	96.6	0.0	-0.11	2.38	0.64	0.73	0.69	6512	791	3	0	6	0	0	logfile
✔	8JF0	36205	2025-02-11	2023-05-16	3.5	3.90	3.44	3.7	0.015	1.80	0.0	0.08	12.10	0.01	2.235	9.31	0.28	6.8	93.2	0.0	-2.70	0.74	0.78	2.30	3.7	0.004	0.84	0.0	0.05	15.44	0.00	2.421	13.82	2.96	2.2	97.8	0.0	0.99	1.49	0.72	0.75	1.54	6578	872	2	0	0	0	0	logfile
✔	9iZU	61042	2025-02-12	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	8X8Q	38156	2025-02-11	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.003	0.57	0.0	0.04	15.60	0.00	2.603	8.21	1.14	1.3	98.7	0.0	0.25	0.35	0.84	0.87	3.61	4949	622	3	0	1	0	0	logfile
✔	8SGK	40458	2025-02-12	2023-04-12	3.7	3.91	3.67	3.8	0.002	0.56	0.0	0.04	17.41	0.00	2.269	9.42	0.26	0.4	99.6	0.0	0.76	0.81	0.78	0.79	3.8	0.004	1.07	1.0	0.05	17.50	0.01	0.815	10.01	2.19	1.5	98.5	0.0	1.00	0.93	0.82	0.79	0.89	7622	986	4	0	2	0	0	logfile
✔	8JPP	36486	2025-02-12	2023-06-12	3.2	3.55	3.24	3.5	0.004	0.65	0.0	0.04	15.09	0.01	2.223	8.99	0.68	4.6	95.4	0.0	-0.08	0.66	0.82	3.05	3.5	0.003	0.60	0.0	0.04	16.00	0.00	2.564	6.78	3.12	3.5	96.5	0.0	0.54	0.40	0.66	0.83	2.37	7137	922	5	0	1	0	0	logfile
✔	8GAG	29898	2025-02-12	2023-02-22	3.3	3.55	3.31	3.5	0.005	0.81	0.0	0.05	15.82	0.00	2.132	14.56	0.00	3.5	96.5	0.0	-1.79	0.63	0.68	1.54	3.5	0.003	0.62	0.0	0.04	16.79	0.00	2.432	6.89	2.17	2.8	97.2	0.0	-0.18	0.94	0.60	0.72	0.92	8469	1110	6	0	1	0	0	logfile
✔	8iZP	35867	2025-02-14	2023-04-07	3.31	3.72	3.43	3.7	0.015	2.04	19.0	0.13	17.71	0.01	2.316	9.67	15.23	3.7	96.2	0.2	-1.61	0.67	0.82	1.87	3.7	0.003	0.67	0.0	0.04	16.72	0.00	2.501	5.68	4.10	2.2	97.8	0.0	0.92	1.65	0.62	0.82	1.62	9425	1210	1	0	0	0	0	logfile
✔	8WNT	37672	2025-02-12	2023-10-06	3.42	3.69	3.43	3.7	0.004	0.67	0.0	0.04	16.76	0.00	2.232	8.37	0.77	5.6	94.2	0.2	0.29	0.60	0.76	1.32	3.7	0.003	0.70	0.0	0.04	16.81	0.00	2.522	7.97	2.56	6.2	93.8	0.0	1.15	1.15	0.59	0.77	0.87	7309	933	5	0	5	0	0	logfile
✔	8ZWJ	60529	2025-02-10	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.003	0.52	0.0	0.05	15.83	0.00	2.573	3.76	3.33	8.7	91.3	0.0	-2.16	1.27	0.42	0.86	4.43	2760	378	8	6	0	0	0	logfile
✔	8J76	36029	2025-02-11	2023-04-27	3.7	3.88	3.80	3.9	0.007	1.24	4.0	0.09	15.61	0.00	1.926	14.52	0.27	7.0	93.0	0.0	-1.36	0.50	0.72	1.35	4.0	0.003	0.75	0.0	0.04	16.04	0.00	2.501	11.33	3.98	5.3	94.7	0.0	0.43	0.54	0.49	0.72	1.48	3771	493	2	0	3	0	0	logfile
✔	8T4E	41028	2025-02-12	2023-06-09	3.5	3.74	3.32	3.7	0.003	0.65	0.0	0.04	16.23	0.00	2.286	5.50	0.28	2.8	97.2	0.0	1.81	0.58	0.73	0.37	3.7	0.003	0.54	0.0	0.04	16.45	0.00	2.448	4.83	3.81	1.9	98.1	0.0	3.12	0.43	0.67	0.80	0.66	7714	1089	3	0	0	0	0	logfile
✔	9B91	44365	2025-02-12	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.004	0.58	0.0	0.04	13.74	0.00	2.289	6.68	2.76	3.5	96.5	0.0	2.14	0.61	0.60	0.86	2.17	7511	993	2	0	3	0	0	logfile
✔	8J6F	36003	2025-02-11	2023-04-25	3.3	3.50	3.25	3.5	0.009	1.06	0.0	0.06	14.30	0.01	2.208	7.88	0.00	9.8	90.2	0.0	-3.18	0.64	0.73	2.32	3.5	0.004	0.68	0.0	0.04	15.98	0.01	2.576	10.90	2.51	8.8	91.2	0.0	-1.86	0.40	0.64	0.75	2.59	3870	496	5	0	1	0	0	logfile

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