Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PQX	20455	2025-02-14	2019-07-10	4.6	4.84	—	4.7	0.006	0.99	0.0	0.06	23.41	0.01	2.222	15.96	2.35	5.2	94.1	0.6	-3.41	0.78	0.79	—	4.7	0.003	0.69	0.0	0.04	22.82	0.00	2.412	12.32	0.00	4.7	95.1	0.2	-1.68	1.68	0.77	0.76	—	10116	960	10	120	4	0	0	logfile
✔	6QPi	4614	2025-02-10	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.42	0.0	0.04	3.84	0.00	2.638	0.89	0.00	2.6	97.4	0.0	3.06	1.22	0.40	0.61	—	2288	462	2	0	0	0	0	logfile
✔	7BZW	30261	2025-02-14	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.004	0.83	0.0	0.06	14.71	0.01	2.550	16.27	0.00	14.1	85.9	0.0	-2.85	1.67	0.94	0.87	—	9756	1212	12	0	0	0	0	logfile
✔	7RU6	24698	2025-02-11	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.92	0.00	2.488	7.56	0.00	1.6	98.4	0.0	3.52	0.75	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	5UZ7	8623	2025-02-12	2017-02-24	4.1	4.03	—	4.0	0.008	1.17	0.0	0.06	11.04	0.01	2.267	7.82	0.37	4.4	95.6	0.0	-2.30	0.64	0.75	—	4.0	0.003	0.75	0.0	0.04	13.45	0.00	2.465	11.87	0.00	4.4	95.6	0.0	-0.23	1.41	0.67	0.77	—	7643	974	5	0	0	0	0	logfile
✔	8UQi	42469	2025-02-12	2023-10-23	4.5	7.64	4.73	6.8	0.003	0.84	0.0	0.04	13.62	0.01	2.118	24.94	0.13	7.6	92.4	0.0	-1.83	0.90	0.79	—	6.9	0.004	0.95	0.0	0.05	14.18	0.01	2.235	20.86	0.00	5.3	93.8	0.8	-0.43	3.91	0.85	0.63	—	7318	962	2	0	0	0	0	logfile
✔	6PW9	20501	2025-02-13	2019-07-22	4.03	4.12	—	4.1	0.007	1.23	0.0	0.24	15.09	0.01	1.781	6.70	1.81	4.4	95.6	0.0	-4.47	0.71	0.70	—	4.1	0.003	0.80	0.0	0.05	14.27	0.00	2.368	11.01	0.00	3.2	96.8	0.0	-1.03	2.49	0.72	0.73	—	8836	1075	5	0	3	0	0	logfile
✔	6RVY	10018	2025-02-13	2019-06-03	4.13	4.25	4.04	4.1	0.006	1.03	0.0	0.06	14.69	0.01	2.290	6.87	0.49	7.5	92.5	0.0	-5.00	0.64	0.81	—	4.1	0.003	0.76	0.0	0.04	13.39	0.00	2.550	9.81	0.00	4.8	95.2	0.0	-0.30	0.71	0.64	0.80	—	9627	1290	3	0	0	0	0	logfile
✔	6GTD	0062	2025-02-11	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	23.09	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.011	1.26	0.0	0.09	22.40	0.01	2.051	27.78	0.00	26.0	73.8	0.2	-4.17	1.33	0.79	0.68	—	6456	1269	4	66	0	0	0	logfile
✔	7KAT	22783	2025-02-14	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.90	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.004	0.63	0.0	0.04	12.16	0.00	2.556	9.07	0.00	2.7	97.3	0.0	2.03	1.32	0.66	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7oTi	13060	2025-02-13	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.004	0.92	0.0	0.05	14.38	0.01	2.417	21.71	0.00	7.9	91.8	0.3	-1.88	1.77	0.53	0.53	—	9171	1182	1	0	0	0	0	logfile
✔	6E0H	8948	2025-02-14	2018-07-06	4.05	4.18	—	4.0	0.009	1.16	0.0	0.06	11.25	0.01	2.262	5.16	0.40	7.6	92.4	0.0	-5.82	0.79	0.80	—	4.0	0.003	0.78	0.0	0.04	12.55	0.00	2.359	8.75	0.00	5.3	94.7	0.0	-0.77	0.89	0.79	0.80	—	9524	1172	4	0	4	0	0	logfile
✔	3JD8	6640	2025-02-14	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	18.26	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.94	0.0	0.05	12.38	0.00	2.432	13.52	0.00	7.9	91.1	1.0	-0.94	1.24	0.57	0.72	—	8050	1133	7	0	25	0	0	logfile
✔	7YCi	33740	2025-02-13	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.009	0.74	0.0	0.04	24.66	0.01	1.830	25.93	0.00	0.0	0.0	0.0	—	0.96	0.95	0.90	—	8474	0	3	395	4	0	0	logfile
✔	7SWN	25476	2025-02-10	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.85	0.0	0.05	14.03	0.01	2.533	18.09	0.00	11.1	88.9	0.0	-3.30	1.22	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	7UY8	26867	2025-02-14	2022-05-06	4.5	8.56	4.38	4.2	0.003	0.63	1.0	0.05	14.55	0.00	2.207	8.69	0.00	6.1	93.9	0.0	-0.66	0.79	0.60	—	4.4	0.002	0.66	0.0	0.04	14.53	0.00	2.439	10.83	0.00	4.9	95.1	0.0	-0.10	1.37	0.92	0.84	—	9552	1161	5	0	1	0	0	logfile
✔	6NT5	0502	2025-02-11	2019-01-28	4.1	4.28	—	4.1	0.006	0.93	0.0	0.05	10.32	0.01	2.300	3.59	0.41	4.7	95.3	0.0	-2.40	0.73	0.82	—	4.1	0.002	0.57	0.0	0.04	12.58	0.00	2.639	6.21	0.00	2.2	97.8	0.0	1.43	1.16	0.73	0.82	—	4586	584	2	0	0	0	0	logfile
✔	7SN2	25209	2025-02-14	2021-10-27	4.3	3.73	—	3.7	0.007	1.31	1.0	0.07	17.66	0.01	1.905	8.33	0.00	0.8	98.9	0.3	-1.92	0.54	0.70	—	3.7	0.003	0.71	0.0	0.05	13.80	0.01	2.345	9.02	0.00	7.0	93.0	0.0	-1.39	0.54	0.54	0.70	—	10092	650	5	0	10	0	4904	logfile
✔	7XSN	33428	2025-02-12	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.008	0.71	0.0	0.04	24.73	0.01	2.105	20.74	0.00	0.0	0.0	0.0	—	0.37	0.92	0.86	—	8279	0	1	387	0	0	0	logfile
✔	7XD4	33135	2025-02-13	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	23.99	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.006	0.79	0.0	0.04	24.53	0.01	1.749	16.03	0.00	0.0	0.0	0.0	—	1.96	0.87	0.79	—	9062	0	2	423	28	0	0	logfile

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