Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7YAT	33719	2025-02-11	2022-06-28	2.2	2.33	1.39	2.3	0.009	1.06	0.0	0.06	14.84	0.00	2.267	9.86	0.00	4.3	95.7	0.0	-4.79	0.61	0.88	7.98	2.3	0.003	0.75	0.0	0.05	15.01	0.00	2.685	11.09	1.82	4.9	95.1	0.0	-5.15	0.36	0.64	0.91	7.30	4129	600	45	0	0	25	0	logfile
✔	8KBY	37087	2025-02-11	2023-08-04	3.23	3.45	3.19	3.5	0.003	0.91	0.0	0.05	14.41	0.00	2.288	12.26	0.00	12.2	87.4	0.4	-4.87	0.50	0.47	2.38	3.4	0.004	0.86	0.0	0.05	15.53	0.00	2.199	11.00	6.91	17.0	83.0	0.0	-5.14	1.75	0.57	0.62	2.85	5050	830	1	0	0	0	0	logfile
✔	6VW2	21410	2025-02-10	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.003	0.79	0.0	0.05	14.99	0.00	2.522	10.47	4.76	15.5	84.5	0.0	-5.13	0.43	0.39	0.70	1.09	1800	240	10	0	0	0	0	logfile
✔	6N3A	9349	2025-02-11	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.90	0.0	0.04	19.10	0.00	2.578	12.91	4.32	11.1	88.9	0.0	-5.12	1.95	0.51	0.79	2.61	4310	600	20	0	0	0	0	logfile
✔	7YR6	34047	2025-02-11	2022-08-09	4.8	5.13	4.65	4.7	0.004	0.88	0.0	0.05	26.03	0.00	2.291	7.11	3.30	15.1	84.9	0.0	-5.39	0.81	0.74	—	4.7	0.003	0.66	0.0	0.04	25.45	0.00	2.424	18.05	0.00	19.8	80.2	0.0	-5.07	1.11	0.82	0.79	—	4248	220	5	118	0	0	0	logfile
✔	9G69	51096	2025-02-11	2024-07-18	4.84	4.50	4.73	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.007	1.14	0.0	0.05	10.65	0.01	2.337	12.27	0.00	28.1	71.6	0.3	-5.07	1.20	0.73	0.75	—	5053	1028	5	0	1	0	0	logfile
✔	7Q67	13854	2025-02-10	2021-11-05	3.37	3.41	2.44	3.4	0.020	2.21	0.0	0.14	14.47	0.01	2.280	12.16	8.00	16.1	83.9	0.0	-4.98	0.51	0.71	2.52	3.5	0.005	1.01	0.0	0.05	18.99	0.00	2.523	21.73	10.18	18.5	81.5	0.0	-5.05	2.51	0.44	0.69	0.92	2618	363	11	0	0	0	0	logfile
✔	7X83	33054	2025-02-10	2022-03-11	3.4	3.15	2.86	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.027	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.5	0.003	0.63	0.0	0.05	14.86	0.00	2.619	9.21	5.03	9.8	90.2	0.0	-5.05	0.95	0.45	0.83	4.49	3258	405	3	0	0	0	0	logfile
✔	7LQi	23487	2025-02-12	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.76	0.0	0.14	23.86	0.01	2.040	117.72	20.50	25.8	74.2	0.0	-5.05	1.41	0.64	0.85	3.63	8400	800	100	0	0	0	0	logfile
✔	7YL7	33903	2025-02-10	2022-07-25	3.3	3.54	3.17	3.5	0.009	0.87	0.0	0.04	14.87	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.004	0.57	0.0	0.04	13.23	0.00	2.567	4.28	1.85	7.7	92.3	0.0	-5.03	0.63	0.45	0.78	5.17	2988	402	12	0	0	0	0	logfile
✔	8X5H	38069	2025-02-10	2023-11-17	3.47	3.52	3.25	3.7	0.009	0.80	0.0	0.06	14.23	0.00	2.023	16.44	0.00	14.3	85.7	0.0	-5.99	0.31	0.84	4.70	3.7	0.003	0.62	0.0	0.05	15.63	0.00	2.522	5.99	4.23	8.8	91.2	0.0	-5.03	0.44	0.30	0.84	3.68	3258	405	3	0	0	0	0	logfile
✔	8iHV	35460	2025-02-10	2023-02-23	3.11	3.08	2.87	3.3	0.005	0.73	0.0	0.05	13.40	0.00	2.395	12.57	0.00	23.9	76.1	0.0	-6.37	0.39	0.84	6.17	3.3	0.004	0.74	0.0	0.05	15.43	0.00	2.458	2.44	3.85	18.9	81.1	0.0	-5.02	1.23	0.40	0.86	5.82	1446	207	3	0	0	0	0	logfile
✔	6iC3	4452	2025-02-11	2018-12-02	3.3	4.00	—	3.9	0.010	1.26	0.0	0.06	16.17	0.01	2.017	9.22	1.39	16.9	83.1	0.0	-5.61	0.76	0.80	1.39	4.2	0.005	0.89	0.0	0.04	17.45	0.01	2.516	13.34	2.08	13.2	86.8	0.0	-5.00	1.21	0.72	0.77	0.69	5472	728	8	0	0	0	0	logfile
✔	9FAB	50271	2025-02-13	2024-05-10	3.9	3.54	3.80	3.6	0.010	1.57	0.0	0.07	11.24	0.01	2.042	7.97	0.00	1.7	98.3	0.0	-4.50	0.44	0.68	2.55	3.6	0.003	0.62	0.0	0.04	14.49	0.00	2.536	5.08	2.27	7.7	92.3	0.0	-4.95	1.31	0.46	0.70	2.17	8595	585	10	0	5	0	4190	logfile
✔	7L7H	23212	2025-02-10	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.88	0.0	0.06	17.07	0.00	2.558	12.46	11.76	23.2	76.8	0.0	-4.95	0.78	0.51	0.64	—	2430	352	8	0	0	0	0	logfile
✔	7M61	23686	2025-02-10	2021-03-25	3.8	3.83	—	4.1	0.005	1.02	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	3.9	0.003	0.78	0.0	0.05	14.92	0.00	2.310	18.29	4.10	12.9	87.1	0.0	-4.93	1.31	0.49	0.74	2.46	1690	230	20	0	10	0	0	logfile
✔	8CGG	16642	2025-02-10	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.004	0.85	0.0	0.04	17.07	0.00	2.634	0.78	0.00	5.1	94.9	0.0	-4.93	0.95	0.51	0.92	7.73	2710	400	5	0	0	0	0	logfile
✔	8AZ6	15755	2025-02-11	2022-09-05	3.1	3.15	3.07	3.1	0.004	0.43	0.0	0.04	9.46	0.00	2.212	5.45	0.00	4.8	95.2	0.0	-4.04	0.50	0.84	6.14	3.1	0.003	0.56	0.0	0.04	13.93	0.00	2.301	2.12	4.21	4.5	95.5	0.0	-4.92	0.73	0.51	0.87	6.03	3420	460	40	0	20	0	0	logfile
✔	6HUD	0274	2025-02-10	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.020	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.003	0.74	0.0	0.05	13.42	0.00	2.556	13.58	1.21	5.5	94.5	0.0	-4.92	1.48	0.56	0.78	—	2905	385	5	0	0	0	0	logfile
✔	7VQQ	32092	2025-02-10	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.003	0.70	0.0	0.04	12.32	0.00	2.573	1.11	2.74	3.4	96.6	0.0	-4.91	0.29	0.47	0.87	4.65	1968	273	3	0	0	0	0	logfile

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