Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TJQ	41308	2025-02-13	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.78	0.0	0.04	24.52	0.01	1.771	21.71	0.00	0.0	0.0	0.0	—	0.17	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8oL3	16944	2025-02-11	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.003	0.48	0.0	0.06	16.21	0.00	2.589	11.90	2.80	9.0	91.0	0.0	-0.92	0.93	0.33	0.69	4.73	4970	330	10	0	0	0	2500	logfile
✔	9C6i	45247	2025-02-12	2024-06-07	2.56	3.19	2.65	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	7R6N	24283	2025-02-12	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.84	0.0	0.04	24.91	0.01	1.757	15.00	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	8AZ2	15730	2025-02-10	2022-09-05	3.4	3.30	3.43	3.7	0.003	0.45	0.0	0.04	9.02	0.00	2.412	5.63	0.00	0.0	100.0	0.0	-2.98	0.52	0.85	6.33	3.6	0.004	0.61	0.0	0.05	11.42	0.00	2.381	1.41	1.25	2.5	97.5	0.0	-3.04	0.47	0.49	0.86	5.92	2935	395	30	0	15	0	0	logfile
✔	9EME	19818	2025-02-11	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.019	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.93	0.00	2.500	3.86	1.13	5.5	94.5	0.0	-3.06	1.19	0.49	0.82	4.97	4140	552	6	0	0	0	0	logfile
✔	8AZ1	15729	2025-02-10	2022-09-05	3.1	3.21	3.04	3.5	0.004	0.58	0.0	0.04	10.90	0.00	2.374	8.00	0.00	0.0	100.0	0.0	-1.57	0.49	0.85	5.69	3.5	0.004	0.53	0.0	0.05	12.99	0.00	1.620	3.14	0.00	0.0	100.0	0.0	-2.21	0.43	0.47	0.85	5.53	1830	250	20	0	10	0	0	logfile
✔	7R6M	24282	2025-02-12	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.87	0.0	0.04	25.54	0.01	1.758	13.81	0.00	0.0	0.0	0.0	—	0.17	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	8TJU	41311	2025-02-14	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.71	0.0	0.04	24.83	0.01	1.789	23.91	0.00	0.0	0.0	0.0	—	0.46	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	8oH2	16876	2025-02-11	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.004	0.62	0.0	0.05	18.01	0.00	2.210	1.49	2.55	0.5	99.5	0.0	-2.32	1.10	0.50	0.89	6.19	3702	468	102	0	72	30	0	logfile
✔	8K15	36786	2025-02-14	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.009	0.91	0.0	0.05	24.72	0.01	1.745	4.29	0.00	0.0	0.0	0.0	—	0.29	0.68	0.82	—	10093	0	2	470	2	0	0	logfile
✔	8QPZ	18570	2025-02-11	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.006	0.65	0.0	0.05	12.95	0.00	2.528	4.15	8.10	6.1	93.9	0.0	-2.39	0.41	0.52	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	8oT4	17168	2025-02-11	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.004	0.78	0.0	0.05	17.90	0.00	2.602	7.32	1.72	1.4	98.6	0.0	-2.54	1.33	0.60	0.79	3.95	3444	444	12	0	0	0	0	logfile
✔	8Ci8	16671	2025-02-11	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.005	0.64	0.0	0.04	16.64	0.00	2.605	9.21	6.40	1.6	98.4	0.0	-3.13	1.20	0.66	0.86	4.97	3430	485	25	0	0	0	0	logfile
✔	8CZi	27098	2025-02-10	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.17	0.00	2.440	4.09	1.68	0.0	100.0	0.0	5.65	0.84	0.82	0.84	1.88	2550	339	6	0	0	0	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	8FF2	29036	2025-02-11	2022-12-07	2.87	2.65	2.28	3.2	0.005	0.43	0.0	0.04	10.64	0.00	2.540	4.96	0.00	0.0	100.0	0.0	-2.01	0.51	0.80	6.45	3.1	0.006	0.71	0.0	0.05	17.24	0.00	2.404	7.43	2.07	4.2	95.8	0.0	-2.97	2.66	0.52	0.82	5.91	5650	380	10	0	0	0	2740	logfile
✔	8AZ3	15731	2025-02-11	2022-09-05	3.4	2.64	3.43	3.6	0.005	0.66	0.0	0.06	9.60	0.00	2.509	6.87	0.00	0.0	100.0	0.0	-2.88	0.47	0.83	5.76	3.6	0.003	0.56	0.0	0.04	11.93	0.00	2.110	4.07	1.82	3.0	97.0	0.0	-4.51	0.60	0.48	0.85	6.24	4040	540	40	0	20	0	0	logfile
✔	8oT3	17167	2025-02-10	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.003	0.72	0.0	0.05	16.62	0.00	2.532	7.05	3.17	3.8	96.2	0.0	-3.41	1.86	0.42	0.79	7.11	2460	336	12	0	0	0	0	logfile
✔	7TD6	25824	2025-02-11	2021-12-30	3.0	3.41	3.09	3.4	0.002	0.57	0.0	0.05	16.47	0.00	2.449	7.94	0.00	0.0	100.0	0.0	-3.11	0.42	0.76	2.95	3.4	0.004	0.80	0.0	0.05	18.75	0.00	2.365	10.43	2.35	7.1	92.9	0.0	-3.87	1.31	0.42	0.76	3.81	5575	690	5	0	0	0	0	logfile

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