Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7L7H	23212	2025-02-10	2020-12-28	4.0	2.39	—	4.0	0.008	1.47	0.0	0.08	15.10	0.01	2.199	13.87	3.53	36.3	63.7	0.0	-6.00	0.47	0.60	—	4.0	0.004	0.88	0.0	0.06	17.07	0.00	2.558	12.46	11.76	23.2	76.8	0.0	-4.95	0.78	0.51	0.64	—	2430	352	8	0	0	0	0	logfile
✔	6oSM	20186	2025-02-11	2019-05-01	3.4	3.31	—	3.4	0.012	1.45	0.0	0.09	14.06	0.00	2.183	28.91	14.88	34.5	65.5	0.0	-5.34	0.46	0.74	2.68	3.4	0.003	0.94	0.0	0.05	14.31	0.00	2.535	15.41	7.80	18.6	81.4	0.0	-4.44	1.18	0.43	0.71	3.29	4100	600	10	0	0	0	0	logfile
✔	7KXY	23067	2025-02-13	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.007	1.08	0.0	0.06	14.97	0.01	2.500	33.13	0.10	23.1	76.8	0.1	-5.21	1.26	0.65	0.64	—	9510	1181	2	0	0	0	0	logfile
✔	6VW2	21410	2025-02-10	2020-02-18	3.4	3.62	—	3.8	0.006	1.13	0.0	0.06	14.20	0.01	2.292	24.13	0.00	27.3	72.7	0.0	-4.46	0.42	0.71	2.71	3.9	0.003	0.79	0.0	0.05	14.99	0.00	2.522	10.47	4.76	15.5	84.5	0.0	-5.13	0.43	0.39	0.70	1.09	1800	240	10	0	0	0	0	logfile
✔	8GRS	34214	2025-02-11	2022-09-02	3.3	3.91	3.48	3.8	0.016	1.94	6.0	0.13	26.31	0.02	1.285	16.08	44.03	21.3	72.9	5.8	-5.46	0.61	0.72	1.86	3.8	0.004	0.81	0.0	0.04	18.99	0.01	2.373	12.13	7.49	11.9	87.8	0.3	-0.55	1.94	0.47	0.77	1.69	5148	626	2	0	1	0	0	logfile
✔	7DWV	30887	2025-02-10	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.77	0.0	0.05	17.76	0.00	2.493	15.42	19.44	23.6	76.4	0.0	-6.15	1.11	0.40	0.75	2.35	2064	258	6	0	0	0	0	logfile
✔	7VZF	32227	2025-02-10	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.93	0.0	0.05	19.17	0.00	2.345	10.57	6.74	18.8	81.2	0.0	-4.25	1.85	0.37	0.63	-0.39	2628	363	3	0	0	0	0	logfile
✔	5LY6	4118	2025-02-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.83	0.0	0.04	14.06	0.01	2.517	13.25	0.00	10.2	89.6	0.2	-2.86	3.31	0.40	0.77	—	3725	471	1	0	0	0	0	logfile
✔	9B34	44125	2025-02-11	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.004	1.03	0.0	0.05	16.69	0.01	2.096	16.14	3.21	22.6	76.6	0.9	-4.24	2.02	0.70	0.71	0.92	3619	474	4	0	4	0	0	logfile
✔	9B33	44124	2025-02-11	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.02	0.0	0.06	12.59	0.01	1.977	22.31	0.00	22.6	76.4	1.1	-4.71	1.20	0.68	0.68	—	3619	474	4	0	4	0	0	logfile
✔	8D1B	27121	2025-02-11	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.025	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.004	0.86	0.0	0.04	16.56	0.01	2.446	9.70	2.63	17.6	82.4	0.0	-4.72	2.73	0.74	0.79	2.04	6724	874	4	0	0	0	0	logfile
✔	8iHV	35460	2025-02-10	2023-02-23	3.11	3.08	2.87	3.3	0.005	0.73	0.0	0.05	13.40	0.00	2.395	12.57	0.00	23.9	76.1	0.0	-6.37	0.39	0.84	6.17	3.3	0.004	0.74	0.0	0.05	15.43	0.00	2.458	2.44	3.85	18.9	81.1	0.0	-5.02	1.23	0.40	0.86	5.82	1446	207	3	0	0	0	0	logfile
✔	8GSo	34237	2025-02-14	2022-09-06	3.3	3.69	3.38	3.7	0.013	1.66	18.0	0.11	25.12	0.01	1.194	20.44	41.49	17.0	76.3	6.7	-5.21	0.57	0.72	1.47	3.7	0.005	0.87	0.0	0.05	18.13	0.01	2.400	12.88	4.51	12.6	87.0	0.4	-0.45	1.07	0.58	0.86	1.62	10624	1322	2	0	0	0	0	logfile
✔	7NNH	12477	2025-02-11	2021-02-24	4.0	5.15	—	4.2	0.004	1.28	0.0	0.05	15.82	0.01	2.066	35.16	0.34	23.0	76.5	0.5	-3.61	0.74	0.80	—	4.2	0.004	1.08	0.0	0.05	16.98	0.01	2.517	24.36	3.06	20.2	79.7	0.2	-2.76	1.13	0.75	0.80	—	5299	637	1	0	0	0	0	logfile
✔	7BW7	30229	2025-02-13	2020-04-13	4.1	4.55	4.28	4.4	0.008	1.06	0.0	0.06	16.20	0.01	2.050	40.13	0.00	23.4	76.6	0.0	-5.62	0.73	0.67	—	4.4	0.004	0.83	0.0	0.05	15.25	0.00	2.419	15.88	0.00	13.2	86.8	0.0	-4.03	0.74	0.71	0.65	—	8824	1091	3	0	0	0	0	logfile
✔	7M62	23687	2025-02-10	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.3	0.004	0.98	0.0	0.05	16.49	0.00	2.406	18.36	2.96	18.0	82.0	0.0	-4.77	2.12	0.58	0.66	3.09	2380	320	20	0	10	0	0	logfile
✔	8GRo	34210	2025-02-14	2022-09-02	3.5	3.98	3.66	3.9	0.013	1.67	17.0	0.11	25.25	0.01	1.194	18.95	41.49	16.3	77.1	6.6	-5.21	0.60	0.74	1.94	3.9	0.004	0.87	0.0	0.04	18.71	0.01	2.475	13.81	4.77	11.4	88.3	0.3	-0.57	1.30	0.57	0.81	1.64	10624	1322	2	0	0	0	0	logfile
✔	6HV8	0287	2025-02-13	2018-10-10	4.4	4.51	—	4.4	0.009	1.62	2.0	0.08	10.20	0.01	1.472	8.97	1.31	22.1	77.3	0.6	-4.84	0.74	0.72	—	4.4	0.004	0.87	0.0	0.05	12.84	0.00	2.422	13.86	0.00	13.9	86.1	0.0	-2.94	0.99	0.75	0.72	—	9206	1184	3	0	2	0	0	logfile
✔	7BW8	30230	2025-02-11	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.42	0.01	2.383	16.35	4.87	11.8	88.2	0.0	-3.19	1.53	0.68	0.63	0.43	6021	737	3	0	0	0	0	logfile
✔	7SWN	25476	2025-02-10	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.85	0.0	0.05	14.03	0.01	2.533	18.09	0.00	11.1	88.9	0.0	-3.30	1.22	0.57	0.68	—	3283	422	3	0	0	0	0	logfile

• ← previous
• Page 3 of 255
• next →