Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1J	33563	2025-02-14	2022-06-08	3.0	3.08	2.83	3.1	0.004	0.51	0.0	0.04	12.14	0.00	1.971	5.91	0.69	0.8	99.2	0.0	2.20	0.67	0.83	3.67	3.1	0.003	0.50	0.0	0.04	15.21	0.00	1.943	4.97	2.07	1.2	98.8	0.0	2.73	0.43	0.71	0.86	3.12	9487	1204	2	0	5	0	0	logfile
✔	8BDZ	15995	2025-02-10	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.63	0.0	0.04	14.42	0.00	2.509	6.39	1.64	2.0	98.0	0.0	2.99	0.44	0.49	0.86	2.77	3309	414	3	0	0	0	0	logfile
✔	7M8J	23717	2025-02-12	2021-03-29	3.48	3.83	3.41	3.7	0.006	0.96	0.0	0.05	14.72	0.00	1.837	12.31	0.00	6.8	93.2	0.0	-0.32	0.69	0.80	2.61	3.7	0.003	0.62	0.0	0.04	15.20	0.00	2.329	4.06	1.55	5.9	94.1	0.0	-0.66	0.45	0.69	0.81	2.77	6915	453	3	0	0	0	3398	logfile
✔	8DRN	27678	2025-02-11	2022-07-21	4.12	4.23	4.09	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.003	0.79	0.0	0.05	13.92	0.00	2.367	19.37	0.13	5.6	94.4	0.0	-2.20	1.88	0.59	0.72	—	6578	811	2	0	0	0	0	logfile
✔	7X0Z	32930	2025-02-13	2022-02-22	2.96	3.20	—	3.2	0.007	0.79	0.0	0.04	14.78	0.00	1.974	7.24	0.00	4.8	95.2	0.0	0.45	0.65	0.84	3.46	3.2	0.004	0.59	0.0	0.04	17.02	0.00	1.903	5.10	2.88	4.5	95.5	0.0	1.06	0.90	0.66	0.87	2.99	9285	1156	4	0	4	0	0	logfile
✔	7ZDT	14669	2025-02-13	2022-03-29	2.71	2.89	2.68	2.9	0.005	0.66	0.0	0.04	13.92	0.00	1.945	6.38	0.00	1.3	98.7	0.0	-0.81	0.76	0.90	3.85	2.8	0.003	0.51	0.0	0.04	16.18	0.00	1.978	3.85	1.71	1.6	98.4	0.0	2.76	0.91	0.74	0.91	3.43	9003	1155	3	0	2	0	0	logfile
✔	8D48	27177	2025-02-11	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.003	0.72	0.0	0.05	15.94	0.01	2.482	6.89	2.57	6.1	93.9	0.0	-0.88	0.97	0.74	0.80	2.13	5545	714	4	0	2	0	0	logfile
✘	7PHP	13424	2025-02-13	2021-08-18	3.47	3.48	—	3.6	0.017	0.90	0.0	0.05	14.25	0.01	2.182	6.60	0.11	7.0	93.0	0.0	-1.50	0.72	0.83	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8647	1134	8	0	0	21	0	logfile
✔	7ZDK	14652	2025-02-13	2022-03-29	3.01	3.14	2.96	3.1	0.007	0.78	0.0	0.05	16.14	0.00	2.219	7.96	0.00	1.6	98.4	0.0	-1.50	0.76	0.89	3.46	3.1	0.003	0.55	0.0	0.04	15.83	0.00	1.963	5.40	1.91	1.9	98.1	0.0	2.15	0.32	0.72	0.90	2.80	9089	1161	4	0	4	0	0	logfile
✔	7MTQ	23994	2025-02-14	2021-05-13	3.65	2.61	—	2.2	0.011	0.88	1.0	0.05	14.58	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.005	0.63	0.0	0.04	14.90	0.00	2.505	5.89	2.34	4.0	96.0	0.0	0.34	0.41	0.72	0.75	1.78	10388	1486	4	0	4	0	0	logfile
✔	7YQM	34029	2025-02-11	2022-08-08	2.89	3.15	2.89	3.2	0.005	0.58	0.0	0.05	11.88	0.00	2.294	1.86	0.17	4.7	95.3	0.0	-0.02	0.67	0.78	4.18	3.2	0.003	0.55	0.0	0.04	15.59	0.00	2.626	5.68	1.50	3.7	96.3	0.0	0.61	1.48	0.68	0.80	3.44	5656	723	1	0	0	0	0	logfile
✔	8BER	16009	2025-02-10	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.67	0.0	0.04	14.43	0.00	2.436	8.21	0.82	4.7	95.3	0.0	2.79	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8DZR	27806	2025-02-12	2022-08-08	2.61	2.15	2.73	2.0	0.004	0.68	0.0	0.05	12.94	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.003	0.60	0.0	0.04	15.33	0.00	2.496	5.95	2.99	3.7	96.3	0.0	0.72	0.33	0.78	0.78	3.15	7944	1073	6	0	1	0	0	logfile
✔	7YS6	34073	2025-02-13	2022-08-11	3.0	2.25	3.04	3.2	0.007	1.11	0.0	0.06	15.45	0.01	1.631	8.57	0.53	3.9	96.1	0.0	-2.80	0.75	0.73	1.64	3.1	0.004	0.66	0.0	0.04	16.79	0.00	2.517	8.39	3.90	3.0	97.0	0.0	0.31	1.24	0.77	0.77	2.39	8794	1129	6	0	1	0	0	logfile
✔	7P02	13141	2025-02-13	2021-06-29	2.87	3.05	—	3.1	0.012	1.51	0.0	0.10	11.73	0.00	2.086	6.28	1.12	4.6	95.4	0.0	-1.72	0.66	0.81	3.20	3.1	0.004	0.68	0.0	0.04	15.28	0.00	2.533	9.22	2.15	1.9	98.1	0.0	0.52	0.71	0.64	0.84	3.30	9062	1138	8	0	2	0	0	logfile
✔	7RU4	24696	2025-02-11	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.65	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.77	0.0	0.05	14.64	0.00	2.530	7.05	3.01	6.2	93.8	0.0	-0.80	1.33	0.76	0.82	3.11	3382	428	5	0	4	0	0	logfile
✔	8DRA	27675	2025-02-14	2022-07-20	3.98	4.17	3.98	4.0	0.003	0.77	0.0	0.05	15.74	0.01	2.257	11.58	0.35	5.4	94.6	0.0	-3.01	0.63	0.69	0.62	4.0	0.003	0.81	0.0	0.05	17.31	0.00	2.507	19.82	3.34	6.5	93.5	0.0	-2.92	2.05	0.67	0.76	0.68	9899	1218	3	0	0	0	0	logfile
✔	6KNG	0731	2025-02-12	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	4.97	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	3.2	0.004	0.56	0.0	0.05	14.83	0.00	2.061	2.81	2.57	1.5	98.5	0.0	-0.24	0.95	0.82	0.92	3.96	7749	1002	6	0	6	0	0	logfile
✔	7T01	25574	2025-02-11	2021-11-29	2.69	2.92	2.50	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.005	0.98	0.0	0.05	16.30	0.01	2.485	13.96	4.02	6.2	93.8	0.0	-1.51	1.09	0.72	0.85	3.52	3343	428	3	0	0	0	0	logfile
✔	8E2G	27835	2025-02-12	2022-08-15	2.99	3.17	3.03	3.1	0.003	0.60	0.0	0.04	15.68	0.00	1.928	12.10	2.42	6.4	93.6	0.0	-1.77	0.46	0.74	2.37	3.1	0.003	0.58	0.0	0.04	15.78	0.00	2.341	8.40	0.88	6.4	93.6	0.0	-1.37	1.36	0.47	0.74	2.26	8110	523	1	0	0	0	4078	logfile

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