Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iWQ	60959	2025-02-11	2024-07-25	2.08	2.25	2.08	2.2	0.022	2.14	21.0	0.22	12.56	0.01	2.493	0.18	0.00	1.0	99.0	0.0	1.04	0.22	0.91	6.38	2.2	0.002	0.44	0.0	0.04	13.91	0.00	2.565	0.70	0.97	0.3	99.7	0.0	3.35	0.97	0.21	0.91	5.15	5683	387	1	0	0	0	2830	logfile
✔	7ZYL	15026	2025-02-11	2022-05-25	2.08	2.56	2.12	2.4	0.022	0.98	0.0	0.05	24.65	0.00	2.104	14.15	0.00	0.8	99.2	0.0	0.55	0.77	0.89	6.49	2.4	0.003	0.61	0.0	0.04	20.03	0.00	2.615	4.37	1.67	0.8	99.2	0.0	0.44	0.29	0.79	0.90	6.20	3992	484	12	0	12	0	0	logfile
✔	7KJR	22898	2025-02-11	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	19.50	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.54	0.0	0.04	17.41	0.00	2.502	7.73	1.23	1.6	98.4	0.0	2.23	0.24	0.66	0.87	4.90	3840	448	8	0	2	122	0	logfile
✔	7RZQ	24774	2025-02-10	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.004	0.35	0.0	0.03	14.97	0.00	2.615	4.49	1.07	0.0	100.0	0.0	5.42	0.29	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	8UVC	42615	2025-02-12	2023-11-02	2.09	2.64	2.05	2.5	0.005	0.73	2.0	0.05	14.95	0.01	2.262	7.73	0.47	0.5	99.5	0.0	2.48	0.65	0.88	3.59	2.5	0.003	0.56	0.0	0.04	14.38	0.00	2.282	6.38	0.81	1.0	99.0	0.0	2.93	0.90	0.67	0.91	3.81	8558	1026	4	0	22	0	0	logfile
✔	7QEW	13943	2025-02-14	2021-12-03	2.1	2.62	—	2.2	0.005	0.86	0.0	0.03	11.15	0.00	2.191	3.73	2.18	3.3	96.7	0.0	1.32	0.78	0.89	4.62	2.3	0.003	0.66	0.0	0.04	14.43	0.00	2.565	5.15	2.28	2.7	97.3	0.0	3.06	1.34	0.79	0.92	3.36	9702	1128	18	0	30	234	0	logfile
✔	8oTG	17178	2025-02-10	2023-04-20	2.1	2.26	2.03	2.1	0.009	1.12	0.0	0.07	11.34	0.01	2.479	1.02	3.03	2.7	97.3	0.0	-2.90	0.45	0.91	7.89	2.1	0.004	0.73	0.0	0.05	14.60	0.00	2.606	2.22	1.52	1.6	98.4	0.0	-1.76	2.89	0.45	0.93	7.25	2870	375	5	0	0	0	0	logfile
✔	8Q8R	18258	2025-02-11	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.003	0.73	0.0	0.05	17.18	0.00	2.601	3.11	2.78	7.7	92.3	0.0	-1.59	1.64	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	8XSi	38619	2025-02-11	2024-01-09	2.1	2.13	2.10	1.9	0.003	0.60	0.0	0.05	12.12	0.00	2.136	4.88	0.55	6.4	93.4	0.2	-0.70	0.80	0.79	4.65	1.9	0.003	0.62	0.0	0.05	13.83	0.00	2.541	3.66	1.92	5.9	93.9	0.2	-0.76	0.89	0.83	0.82	4.65	3354	429	4	0	1	0	0	logfile
✔	7PBW	13307	2025-02-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.003	0.72	0.0	0.04	14.22	0.01	2.236	6.63	0.15	0.0	100.0	0.0	4.78	0.28	0.77	0.90	7.22	9500	873	54	0	81	230	0	logfile
✔	7RZV	24779	2025-02-10	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.96	0.00	2.434	3.69	1.01	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✘	9ENQ	19838	2025-02-11	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5743	707	6	4	4	7	0	logfile
✔	7RTB	24680	2025-02-13	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.004	0.60	0.0	0.04	16.86	0.00	2.331	15.48	4.09	3.8	96.2	0.0	1.43	0.68	0.68	0.83	4.09	8979	1169	7	0	0	1	7	logfile
✔	7ZZ6	15036	2025-02-12	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.005	0.64	0.0	0.04	17.01	0.00	2.055	5.29	1.39	2.8	97.2	0.0	1.05	0.24	0.93	0.92	4.78	8257	1017	6	0	6	157	0	logfile
✔	8TEG	41185	2025-02-11	2023-07-06	2.15	2.08	2.12	2.2	0.007	0.74	0.0	0.04	15.68	0.00	2.185	1.68	1.05	1.4	98.6	0.0	1.81	0.63	0.88	4.56	2.2	0.003	0.57	0.0	0.04	16.00	0.00	2.609	2.12	1.48	1.4	98.6	0.0	2.13	1.20	0.63	0.88	4.84	4518	561	4	0	0	88	0	logfile
✔	8G12	29659	2025-02-14	2023-02-01	2.17	3.50	2.16	2.8	0.006	0.87	0.0	0.05	14.96	0.01	2.394	5.72	0.38	4.3	95.7	0.0	-1.26	0.93	0.93	4.11	2.8	0.003	0.56	0.0	0.04	15.34	0.01	2.584	2.02	0.58	3.0	97.0	0.0	0.72	0.30	0.94	0.95	4.93	9980	1336	4	0	0	0	0	logfile
✔	8UVF	42618	2025-02-12	2023-11-02	2.17	2.37	2.19	2.5	0.005	0.68	2.0	0.05	15.06	0.01	2.198	8.72	0.47	0.8	99.2	0.0	2.18	0.65	0.84	3.77	2.5	0.003	0.57	0.0	0.04	15.02	0.01	2.246	7.30	1.40	0.8	99.2	0.0	2.35	0.95	0.64	0.86	3.73	8520	1026	4	0	22	0	0	logfile
✔	8Q9H	18281	2025-02-11	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.003	0.56	0.0	0.05	16.95	0.00	2.455	0.59	0.26	1.9	98.1	0.0	-1.77	1.83	0.41	0.86	6.16	6822	438	6	0	0	0	3480	logfile
✔	8GVK	32099	2025-02-11	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.004	0.85	0.0	0.05	15.49	0.00	2.592	8.00	2.62	5.3	93.8	0.9	-0.81	0.88	0.74	0.85	6.42	3567	476	8	0	0	19	0	logfile
✔	7UZS	26917	2025-02-14	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.89	0.00	2.443	2.22	1.25	1.2	98.8	0.0	1.38	0.33	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile

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