Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8Jo3	36454	2025-02-11	2023-06-07	2.66	2.82	2.65	2.8	0.003	0.53	0.0	0.04	18.82	0.00	2.196	9.66	2.56	1.4	98.6	0.0	1.75	0.70	0.82	3.43	2.8	0.004	0.56	0.0	0.04	18.55	0.00	2.334	6.50	2.88	1.6	98.4	0.0	1.63	0.23	0.70	0.82	3.82	5715	709	4	0	3	0	0	logfile
✔	8EZ3	28728	2025-02-11	2022-10-31	2.5	2.94	2.70	2.9	0.004	0.64	0.0	0.05	18.43	0.00	2.080	8.39	4.85	4.1	95.9	0.0	-0.81	0.50	0.86	4.53	2.9	0.008	0.68	0.0	0.05	16.36	0.00	2.530	7.66	3.92	5.7	94.3	0.0	-0.93	0.23	0.45	0.82	4.47	4894	622	5	0	9	0	0	logfile
✔	8GEC	29965	2025-02-11	2023-03-06	3.5	3.88	3.67	3.8	0.003	0.47	0.0	0.04	13.97	0.00	2.247	7.87	0.43	2.3	97.7	0.0	1.35	0.71	0.81	2.38	3.8	0.003	0.46	0.0	0.04	14.39	0.00	2.383	5.66	5.18	2.2	97.8	0.0	1.43	0.23	0.69	0.80	1.98	6125	891	5	0	1	0	0	logfile
✔	8SNC	40622	2025-02-11	2023-04-27	3.2	3.65	3.41	3.6	0.005	0.60	0.0	0.05	16.85	0.00	2.156	6.81	0.16	4.1	95.9	0.0	-0.17	0.61	0.86	2.85	3.6	0.003	0.83	0.0	0.04	16.78	0.00	2.108	5.36	2.24	4.5	95.5	0.0	0.42	0.23	0.57	0.85	2.79	5927	728	5	0	5	1	0	logfile
✔	8EZ7	28729	2025-02-11	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.61	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.004	0.64	0.0	0.05	15.63	0.00	2.450	7.38	3.20	4.2	95.8	0.0	-0.18	0.23	0.50	0.84	3.95	4927	624	5	0	9	0	0	logfile
✔	8P76	17519	2025-02-11	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.62	0.0	0.04	16.65	0.00	2.479	5.59	0.90	1.8	98.1	0.2	1.83	0.23	0.66	0.79	5.12	5261	630	7	0	2	151	0	logfile
✔	8Y85	39034	2025-02-12	2024-02-05	2.73	2.89	2.74	3.0	0.004	0.76	4.0	0.04	16.59	0.01	2.314	3.19	0.68	2.5	97.5	0.0	2.04	0.59	0.78	2.03	3.0	0.003	0.57	0.0	0.04	16.88	0.01	2.615	2.35	1.94	2.5	97.5	0.0	2.43	0.23	0.59	0.78	1.83	8116	1028	4	0	4	0	0	logfile
✔	8CUi	27000	2025-02-13	2022-05-17	2.55	2.73	2.53	2.8	0.003	0.53	0.0	0.04	15.72	0.00	2.264	4.77	0.00	1.7	98.3	0.0	1.71	0.63	0.85	3.07	2.8	0.005	0.68	0.0	0.04	16.22	0.00	2.563	3.89	1.96	2.4	97.6	0.0	1.19	0.23	0.62	0.86	3.45	9357	1230	3	0	0	0	0	logfile
✔	7T4N	25681	2025-02-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.50	0.0	0.04	16.44	0.00	2.547	4.01	1.25	1.1	98.9	0.0	1.55	0.23	0.66	0.87	3.54	6476	803	2	0	0	0	0	logfile
✔	8Y7Z	39027	2025-02-11	2024-02-05	2.57	2.82	2.60	2.9	0.004	0.66	0.0	0.04	20.76	0.00	1.958	14.35	0.33	3.7	96.3	0.0	-0.35	0.69	0.79	3.13	2.9	0.005	0.65	0.0	0.04	21.11	0.01	1.928	11.56	3.95	3.7	96.3	0.0	-0.22	0.24	0.65	0.80	3.25	6488	708	5	41	1	0	0	logfile
✔	9iUP	60911	2025-02-11	2024-07-22	3.3	3.49	3.28	3.5	0.005	0.73	3.0	0.05	16.87	0.00	2.136	8.46	0.14	3.1	96.9	0.0	0.54	0.66	0.83	2.40	3.5	0.003	0.56	0.0	0.04	17.15	0.00	2.475	6.46	2.75	3.3	96.7	0.0	0.61	0.24	0.67	0.85	2.12	6420	787	3	0	2	0	0	logfile
✔	8GGP	40016	2025-02-10	2023-03-08	3.2	3.39	3.22	3.5	0.004	0.52	0.0	0.04	12.49	0.00	2.298	2.48	0.00	1.1	98.9	0.0	1.89	0.51	0.84	4.06	3.5	0.004	0.51	0.0	0.04	13.78	0.00	2.633	1.24	2.58	1.4	98.6	0.0	2.34	0.24	0.52	0.85	3.29	2075	280	2	0	1	0	0	logfile
✔	8SDU	40352	2025-02-11	2023-04-07	2.05	2.16	2.08	2.1	0.002	0.49	0.0	0.04	14.85	0.00	2.231	4.34	0.71	1.0	99.0	0.0	2.05	0.74	0.85	5.13	2.1	0.002	0.53	0.0	0.04	15.07	0.00	2.578	2.55	0.71	0.8	99.2	0.0	2.92	0.24	0.73	0.85	4.74	3942	500	2	0	0	70	0	logfile
✔	8W4A	37264	2025-02-14	2023-08-23	2.69	2.93	2.74	3.0	0.006	0.57	0.0	0.04	14.93	0.00	2.212	5.31	0.00	1.3	98.7	0.0	1.30	0.64	0.87	4.21	3.0	0.003	0.51	0.0	0.04	15.44	0.00	2.546	4.37	0.87	1.3	98.7	0.0	2.23	0.24	0.68	0.88	3.68	9588	1066	8	0	86	0	0	logfile
✔	8GY2	34368	2025-02-14	2022-09-21	2.5	3.19	2.59	3.0	0.007	0.67	0.0	0.04	17.18	0.00	1.759	7.33	2.88	6.8	93.2	0.0	-0.26	0.80	0.89	4.02	3.0	0.004	0.65	0.0	0.04	17.01	0.00	2.210	4.90	1.89	5.9	94.1	0.0	-0.04	0.24	0.80	0.89	4.05	9943	1264	5	0	7	0	0	logfile
✔	7ZZ6	15036	2025-02-12	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.005	0.64	0.0	0.04	17.01	0.00	2.055	5.29	1.39	2.8	97.2	0.0	1.05	0.24	0.93	0.92	4.78	8257	1017	6	0	6	157	0	logfile
✔	8GG6	29996	2025-02-11	2023-03-08	3.3	3.48	3.26	3.5	0.004	0.55	0.0	0.04	15.25	0.00	2.213	3.55	0.31	1.3	98.7	0.0	0.67	0.70	0.88	3.24	3.5	0.002	0.52	0.0	0.04	15.71	0.00	2.507	2.16	2.95	1.7	98.3	0.0	1.01	0.24	0.68	0.87	2.91	6725	904	6	0	2	4	0	logfile
✔	8JEJ	36190	2025-02-13	2023-05-16	2.5	2.72	2.51	2.8	0.030	1.34	0.0	0.49	18.65	0.01	2.165	7.23	2.60	4.3	95.7	0.0	0.11	0.69	0.88	5.00	2.8	0.003	1.09	0.0	0.06	17.88	0.01	1.806	6.10	2.14	4.3	95.6	0.1	0.70	0.24	0.69	0.88	4.87	8604	1089	5	0	6	0	0	logfile
✔	8EX9	28655	2025-02-11	2022-10-25	2.96	3.27	3.00	3.2	0.003	0.49	0.0	0.03	24.07	0.00	2.200	13.65	0.79	4.3	95.7	0.0	-1.52	0.60	0.71	4.83	3.2	0.004	0.59	0.0	0.03	23.86	0.00	2.499	11.21	3.97	5.6	94.4	0.0	-0.74	0.24	0.62	0.72	4.25	4199	166	4	139	0	0	0	logfile
✔	8JL3	36387	2025-02-13	2023-06-02	2.59	2.77	2.59	2.8	0.006	0.63	0.0	0.04	15.27	0.01	2.231	4.60	0.00	1.3	98.7	0.0	1.16	0.70	0.89	4.64	2.8	0.003	0.52	0.0	0.04	15.72	0.00	2.539	3.74	1.86	1.2	98.8	0.0	2.32	0.24	0.69	0.89	3.87	9408	1054	8	0	82	0	0	logfile

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