Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7X1W	32951	2025-02-13	2022-02-24	3.3	3.45	—	3.4	0.007	0.76	0.0	0.04	15.42	0.00	2.163	7.80	0.00	6.5	93.5	0.0	-0.77	0.64	0.83	2.49	3.4	0.004	0.61	0.0	0.04	16.09	0.00	2.522	6.52	2.57	6.1	93.9	0.0	0.25	1.89	0.62	0.84	2.10	9315	1159	4	0	2	0	0	logfile
✔	8BDZ	15995	2025-02-10	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.63	0.0	0.04	14.42	0.00	2.509	6.39	1.64	2.0	98.0	0.0	2.99	0.44	0.49	0.86	2.77	3309	414	3	0	0	0	0	logfile
✔	7M8J	23717	2025-02-12	2021-03-29	3.48	3.83	3.41	3.7	0.006	0.96	0.0	0.05	14.72	0.00	1.837	12.31	0.00	6.8	93.2	0.0	-0.32	0.69	0.80	2.61	3.7	0.003	0.62	0.0	0.04	15.20	0.00	2.329	4.06	1.55	5.9	94.1	0.0	-0.66	0.45	0.69	0.81	2.77	6915	453	3	0	0	0	3398	logfile
✔	7UiU	26553	2025-02-10	2022-03-29	2.8	3.11	2.72	3.1	0.004	0.62	0.0	0.04	13.60	0.00	2.356	3.35	0.00	4.8	95.2	0.0	-2.09	0.28	0.82	1.99	3.3	0.005	0.90	0.0	0.04	18.25	0.00	2.504	8.38	1.67	6.0	94.0	0.0	-2.70	1.37	0.28	0.89	2.33	607	85	1	0	0	0	0	logfile
✔	7X0Z	32930	2025-02-13	2022-02-22	2.96	3.20	—	3.2	0.007	0.79	0.0	0.04	14.78	0.00	1.974	7.24	0.00	4.8	95.2	0.0	0.45	0.65	0.84	3.46	3.2	0.004	0.59	0.0	0.04	17.02	0.00	1.903	5.10	2.88	4.5	95.5	0.0	1.06	0.90	0.66	0.87	2.99	9285	1156	4	0	4	0	0	logfile
✔	7ZDT	14669	2025-02-13	2022-03-29	2.71	2.89	2.68	2.9	0.005	0.66	0.0	0.04	13.92	0.00	1.945	6.38	0.00	1.3	98.7	0.0	-0.81	0.76	0.90	3.85	2.8	0.003	0.51	0.0	0.04	16.18	0.00	1.978	3.85	1.71	1.6	98.4	0.0	2.76	0.91	0.74	0.91	3.43	9003	1155	3	0	2	0	0	logfile
✔	8D48	27177	2025-02-11	2022-06-01	3.7	3.91	3.59	3.9	0.005	0.81	1.0	0.05	16.28	0.01	1.565	11.86	0.00	7.2	92.8	0.0	-1.11	0.72	0.79	2.07	3.9	0.003	0.72	0.0	0.05	15.94	0.01	2.482	6.89	2.57	6.1	93.9	0.0	-0.88	0.97	0.74	0.80	2.13	5545	714	4	0	2	0	0	logfile
✔	8HBW	34645	2025-02-11	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.8	0.003	0.57	0.0	0.04	16.80	0.00	2.523	5.78	2.37	1.7	98.3	0.0	2.99	0.88	0.61	0.88	4.00	3309	414	3	0	4	0	0	logfile
✔	7ZDK	14652	2025-02-13	2022-03-29	3.01	3.14	2.96	3.1	0.007	0.78	0.0	0.05	16.14	0.00	2.219	7.96	0.00	1.6	98.4	0.0	-1.50	0.76	0.89	3.46	3.1	0.003	0.55	0.0	0.04	15.83	0.00	1.963	5.40	1.91	1.9	98.1	0.0	2.15	0.32	0.72	0.90	2.80	9089	1161	4	0	4	0	0	logfile
✔	8B0N	15789	2025-02-12	2022-09-07	2.67	2.99	2.76	3.0	0.004	0.57	0.0	0.04	10.45	0.00	2.267	5.50	0.00	3.4	96.6	0.0	0.75	0.57	0.86	5.58	3.0	0.003	0.55	0.0	0.04	13.17	0.00	2.582	3.87	0.74	3.6	96.4	0.0	1.09	0.87	0.56	0.87	4.48	4004	510	2	0	1	0	0	logfile
✔	6VTL	21381	2025-02-14	2020-02-12	3.65	4.17	—	4.0	0.004	0.80	0.0	0.05	13.73	0.01	2.026	5.90	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.004	0.66	0.0	0.04	15.41	0.00	2.528	8.81	2.46	2.4	97.6	0.0	-1.26	0.52	0.71	0.77	1.93	10242	1338	6	0	6	0	0	logfile
✔	8BER	16009	2025-02-10	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.67	0.0	0.04	14.43	0.00	2.436	8.21	0.82	4.7	95.3	0.0	2.79	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	5MS1	3562	2025-02-11	2016-12-29	4.25	4.22	—	4.2	0.014	1.51	0.0	0.07	9.30	0.01	2.413	2.10	0.00	5.5	93.5	1.1	-0.81	0.37	0.76	—	4.2	0.003	0.67	0.0	0.04	12.91	0.00	2.608	7.80	0.00	2.4	97.6	0.0	-0.76	0.91	0.45	0.84	—	4350	556	2	0	0	0	0	logfile
✔	8DZR	27806	2025-02-12	2022-08-08	2.61	2.15	2.73	2.0	0.004	0.68	0.0	0.05	12.94	0.00	2.224	4.85	0.00	3.3	96.7	0.0	-0.09	0.76	0.74	3.46	1.9	0.003	0.60	0.0	0.04	15.33	0.00	2.496	5.95	2.99	3.7	96.3	0.0	0.72	0.33	0.78	0.78	3.15	7944	1073	6	0	1	0	0	logfile
✔	7ZLJ	14782	2025-02-14	2022-04-15	3.63	3.90	3.68	3.8	0.006	0.81	0.0	0.04	13.84	0.01	2.033	32.13	0.00	4.8	95.1	0.1	0.10	0.69	0.80	1.94	3.8	0.003	0.65	0.0	0.04	15.05	0.00	2.509	7.13	1.04	5.3	94.7	0.1	0.59	1.38	0.67	0.77	1.40	9659	1226	7	0	1	10	0	logfile
✔	6DW1	8923	2025-02-13	2018-06-26	3.1	3.36	—	3.3	0.006	0.97	0.0	0.06	18.01	0.01	2.304	4.67	0.00	5.7	94.3	0.0	-3.70	0.68	0.82	4.57	3.3	0.004	0.73	0.0	0.05	13.64	0.00	2.504	7.39	3.46	5.1	94.9	0.0	-1.73	1.48	0.69	0.85	4.09	8595	1046	13	0	24	0	0	logfile
✔	7MLZ	23914	2025-02-11	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	14.73	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.004	0.82	0.0	0.05	15.50	0.01	2.485	13.95	2.24	15.7	84.1	0.2	-4.26	0.54	0.82	0.65	1.15	4864	624	4	0	5	0	0	logfile
✔	6YJ5	10816	2025-02-10	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.003	0.65	0.0	0.05	14.87	0.00	2.525	6.34	0.61	6.9	93.1	0.0	-1.84	0.77	0.51	0.71	2.50	2061	306	1	0	0	0	0	logfile
✔	7T01	25574	2025-02-11	2021-11-29	2.69	2.92	2.50	3.2	0.004	0.87	0.0	0.05	12.30	0.01	2.335	1.37	0.00	3.8	96.2	0.0	-1.08	0.71	0.83	4.37	3.2	0.005	0.98	0.0	0.05	16.30	0.01	2.485	13.96	4.02	6.2	93.8	0.0	-1.51	1.09	0.72	0.85	3.52	3343	428	3	0	0	0	0	logfile
✔	8D7R	27231	2025-02-14	2022-06-07	3.9	4.13	3.91	4.0	0.003	0.54	0.0	0.04	15.03	0.00	2.345	5.62	0.00	8.1	91.9	0.0	-3.25	0.60	0.56	0.88	4.0	0.003	0.71	0.0	0.04	14.83	0.00	2.436	8.19	2.46	8.8	91.2	0.0	-1.38	0.78	0.63	0.62	1.32	9627	1167	12	0	16	0	0	logfile

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