Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7E1A	30938	2025-02-13	2021-02-01	3.66	4.00	—	3.9	0.012	1.39	0.0	0.07	13.32	0.01	2.233	7.56	0.81	11.6	88.3	0.1	-6.43	0.63	0.78	1.89	3.9	0.003	0.76	0.0	0.04	16.02	0.00	2.492	9.12	2.33	7.3	92.7	0.0	-3.42	1.33	0.63	0.77	1.36	9284	1189	2	0	1	0	0	logfile
✔	8WoM	37692	2025-02-13	2023-10-07	3.5	3.76	3.53	3.7	0.005	1.04	5.0	0.07	11.19	0.01	1.004	3.36	0.00	9.1	90.9	0.0	-6.42	0.66	0.82	2.93	3.7	0.004	0.67	0.0	0.04	13.88	0.00	2.480	4.69	1.73	6.8	93.2	0.0	-2.73	0.73	0.66	0.82	1.83	9348	1217	2	0	1	0	0	logfile
✔	8Woi	37690	2025-02-13	2023-10-07	3.4	3.58	3.35	3.6	0.005	1.20	6.0	0.06	10.49	0.01	1.818	2.83	0.10	9.1	90.8	0.1	-6.42	0.68	0.83	3.78	3.6	0.002	0.65	0.0	0.04	13.82	0.00	2.460	4.33	1.02	7.2	92.8	0.0	-2.90	0.62	0.68	0.85	2.81	9324	1217	1	0	0	0	0	logfile
✔	6VXH	21437	2025-02-13	2020-02-21	4.0	4.27	—	4.2	0.006	1.07	0.0	0.06	16.22	0.01	2.245	5.74	0.31	9.9	89.9	0.2	-6.42	0.65	0.82	—	4.2	0.003	0.77	0.0	0.04	17.02	0.00	2.423	9.03	3.22	9.0	91.0	0.0	-2.01	1.30	0.64	0.82	—	8879	1130	4	0	3	0	0	logfile
✔	7N88	24233	2025-02-13	2021-06-14	3.7	3.90	—	3.9	0.008	1.04	0.0	0.05	15.40	0.01	1.680	28.91	0.81	21.4	78.3	0.2	-6.39	0.74	0.73	1.71	3.9	0.003	0.84	0.0	0.05	16.86	0.01	1.970	14.42	2.95	12.3	87.7	0.0	-3.34	0.55	0.72	0.70	1.39	9402	1220	3	0	4	0	0	logfile
✔	8J2G	35949	2025-02-11	2023-04-14	3.4	3.72	3.48	3.7	0.010	1.14	0.0	0.06	10.18	0.01	2.033	3.24	0.00	10.7	89.3	0.0	-6.39	0.59	0.79	3.09	3.7	0.003	0.74	0.0	0.04	14.65	0.00	2.553	2.35	1.81	8.1	91.9	0.0	-2.70	1.68	0.55	0.78	2.11	5058	650	2	0	0	0	0	logfile
✔	8iHV	35460	2025-02-10	2023-02-23	3.11	3.08	2.87	3.3	0.005	0.73	0.0	0.05	13.40	0.00	2.395	12.57	0.00	23.9	76.1	0.0	-6.37	0.39	0.84	6.17	3.3	0.004	0.74	0.0	0.05	15.43	0.00	2.458	2.44	3.85	18.9	81.1	0.0	-5.02	1.23	0.40	0.86	5.82	1446	207	3	0	0	0	0	logfile
✔	5LiJ	4054	2025-02-10	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.003	0.99	0.0	0.04	8.55	0.00	2.570	10.52	0.00	26.7	73.3	0.0	-5.94	0.59	0.85	0.77	—	761	152	1	0	0	0	0	logfile
✔	6WUN	21917	2025-02-14	2020-05-04	3.9	4.00	—	3.9	0.005	0.80	0.0	0.05	13.70	0.00	2.166	14.26	1.14	18.4	81.6	0.0	-6.35	0.68	0.80	1.75	3.9	0.004	0.80	0.0	0.04	14.97	0.00	2.482	8.55	0.76	14.8	85.2	0.0	-3.77	0.54	0.68	0.79	1.53	10082	1326	4	0	0	0	0	logfile
✔	6YKR	10830	2025-02-14	2020-04-06	3.0	3.10	2.86	3.1	0.004	0.84	0.0	0.05	9.41	0.01	2.314	2.33	0.00	2.6	97.4	0.0	-6.35	0.66	0.85	5.11	3.1	0.003	0.67	0.0	0.04	15.81	0.00	2.606	6.65	1.20	2.4	97.6	0.0	1.18	1.13	0.67	0.88	3.41	10189	1326	9	0	0	6	0	logfile
✔	6LR0	31583	2025-02-14	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.78	0.0	0.04	15.79	0.00	2.519	8.38	2.24	7.3	92.7	0.0	-3.98	0.81	0.65	0.75	1.15	9576	1230	1	0	0	0	0	logfile
✔	8i38	35145	2025-02-12	2023-01-16	2.9	3.23	3.01	3.2	0.006	1.20	4.0	0.07	12.79	0.01	1.981	16.41	0.00	8.8	91.0	0.2	-6.34	0.49	0.71	2.72	3.2	0.003	0.69	0.0	0.04	15.17	0.00	2.534	6.18	1.47	6.6	93.2	0.2	-1.20	1.17	0.49	0.72	1.91	8122	1042	2	0	0	0	0	logfile
✔	7DHR	30682	2025-02-12	2020-11-17	3.8	3.96	—	3.9	0.004	0.86	0.0	0.05	14.29	0.01	2.329	3.92	0.31	9.1	90.8	0.1	-6.33	0.70	0.77	3.13	3.9	0.002	0.64	0.0	0.04	15.46	0.00	2.267	6.51	1.69	7.1	92.9	0.0	-3.50	0.45	0.69	0.77	2.39	7057	977	6	0	1	0	0	logfile
✔	7SHM	25130	2025-02-13	2021-10-09	3.14	3.35	—	3.4	0.006	1.17	3.0	0.06	15.73	0.01	2.322	5.09	0.21	3.0	97.0	0.0	-6.33	0.64	0.82	2.64	3.4	0.005	0.73	0.0	0.04	17.04	0.00	2.530	8.07	3.43	3.9	96.1	0.0	0.03	0.59	0.62	0.85	2.69	9186	1142	4	0	2	0	0	logfile
✔	8D1B	27121	2025-02-11	2022-05-27	3.57	3.85	3.45	3.8	0.006	1.09	0.0	0.05	14.42	0.01	2.025	19.71	0.28	24.1	75.9	0.0	-6.32	0.76	0.81	2.61	3.8	0.004	0.86	0.0	0.04	16.56	0.01	2.446	9.70	2.63	17.6	82.4	0.0	-4.72	2.73	0.74	0.79	2.04	6724	874	4	0	0	0	0	logfile
✔	6WTD	21894	2025-02-13	2020-05-02	4.2	4.24	—	4.2	0.007	1.17	0.0	0.06	15.33	0.01	2.208	7.39	0.86	7.2	92.8	0.0	-6.31	0.56	0.74	—	4.2	0.003	0.85	0.0	0.04	13.22	0.00	2.544	12.48	0.00	4.5	95.5	0.0	-1.81	1.92	0.55	0.72	—	9139	1233	16	0	0	0	0	logfile
✔	6VHL	21207	2025-02-10	2020-01-10	3.3	3.60	—	3.5	0.007	1.03	0.0	0.07	15.85	0.01	1.791	14.51	4.48	14.7	85.3	0.0	-6.30	0.26	0.70	3.54	3.7	0.004	0.78	0.0	0.04	16.71	0.00	2.526	4.56	2.24	10.0	90.0	0.0	-3.04	2.68	0.27	0.70	3.78	1190	158	4	0	0	0	0	logfile
✔	6P49	20247	2025-02-14	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	1.843	18.26	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.004	0.85	0.0	0.05	17.17	0.00	2.503	12.52	3.09	9.7	90.3	0.0	-3.35	1.75	0.55	0.59	1.08	9576	1166	4	0	2	0	0	logfile
✔	6CAA	7441	2025-02-12	2018-01-29	3.9	3.97	—	3.9	0.009	1.33	0.0	0.07	12.41	0.01	1.886	9.42	0.00	13.0	87.0	0.0	-6.23	0.64	0.79	1.91	3.9	0.003	0.88	0.0	0.05	15.79	0.01	2.371	11.52	4.06	11.6	88.4	0.0	-1.23	2.12	0.65	0.79	1.10	7508	954	2	0	0	0	0	logfile
✔	7Y9T	33691	2025-02-12	2022-06-26	3.1	3.31	3.07	3.3	0.018	1.56	18.0	0.09	11.12	0.01	2.034	4.09	0.96	6.7	93.3	0.0	-6.23	0.69	0.87	3.51	3.3	0.004	0.69	0.0	0.04	13.61	0.00	2.608	4.54	1.44	4.9	95.1	0.0	-1.24	0.58	0.67	0.87	3.24	7726	992	4	0	0	0	0	logfile

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