Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RGG	19132	2025-02-12	2023-12-13	4.0	4.37	3.92	4.0	0.012	1.85	5.0	0.10	13.18	0.01	2.531	0.14	0.00	4.1	95.9	0.0	-0.27	0.70	0.46	—	4.0	0.003	0.81	0.0	0.04	15.58	0.00	2.406	13.65	2.74	6.9	93.1	0.0	-0.65	2.96	0.76	0.60	—	7679	1156	7	0	0	0	0	logfile
✘	8XBX	38232	2025-02-11	2023-12-07	4.36	6.89	4.04	7.5	0.005	0.90	0.0	0.04	18.16	0.01	2.260	13.70	0.00	0.9	99.1	0.0	-0.16	0.65	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5873	663	5	38	0	0	0	logfile
✔	8T53	41042	2025-02-11	2023-06-12	4.1	4.29	4.68	4.1	0.002	0.59	0.0	0.04	12.60	0.00	2.201	11.96	0.00	1.8	98.2	0.0	0.81	0.45	0.45	—	4.1	0.003	0.64	0.0	0.04	13.49	0.00	2.448	13.53	0.00	3.4	96.6	0.0	1.21	0.61	0.46	0.47	—	6660	796	2	0	0	0	0	logfile
✔	9C58	45207	2025-02-12	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	8WXE	37904	2025-02-11	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.86	0.0	0.04	18.57	0.00	2.490	12.32	6.92	5.2	94.8	0.0	-0.23	0.93	0.56	0.73	—	4388	548	9	0	1	0	0	logfile
✔	8C89	16473	2025-02-11	2023-01-19	4.41	3.51	3.83	2.2	0.007	1.10	0.0	0.09	14.36	0.01	2.149	25.75	0.71	10.4	89.3	0.3	-2.47	0.75	0.77	—	2.2	0.005	0.84	0.0	0.05	13.64	0.01	2.471	27.53	0.00	11.6	88.4	0.0	-1.81	0.56	0.70	0.65	—	5106	652	5	0	4	0	0	logfile
✔	9B33	44124	2025-02-11	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.02	0.0	0.06	12.59	0.01	1.977	22.31	0.00	22.6	76.4	1.1	-4.71	1.20	0.68	0.68	—	3619	474	4	0	4	0	0	logfile
✔	8ZL9	60223	2025-02-11	2024-05-17	4.36	4.49	4.31	4.4	0.005	1.01	1.0	0.06	14.25	0.01	2.243	9.31	0.14	7.6	92.0	0.4	-2.34	0.56	0.51	—	4.4	0.003	0.75	0.0	0.05	14.20	0.01	2.476	17.86	0.14	10.2	89.7	0.1	-2.10	1.26	0.58	0.55	—	6644	838	5	0	0	0	0	logfile
✘	8UBX	42108	2025-02-11	2023-09-25	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6757	419	2	0	4	68	3328	logfile
✘	8R8T	19009	2025-02-10	2023-11-29	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3256	418	2	0	1	0	0	logfile
✘	7YG6	33809	2025-02-11	2022-07-11	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6025	727	3	9	2	0	0	logfile
✔	8Q5H	18179	2025-02-14	2023-08-09	4.5	4.83	4.50	4.3	0.004	0.82	0.0	0.04	15.49	0.01	2.072	15.56	0.00	3.5	96.5	0.1	0.62	0.66	0.45	—	4.3	0.003	0.77	0.0	0.04	15.54	0.00	2.372	16.29	0.00	3.5	96.4	0.1	0.53	1.87	0.76	0.67	—	9574	1173	7	0	0	0	0	logfile
✔	8i9Q	35280	2025-02-11	2023-02-07	4.22	4.44	4.10	4.3	0.007	0.98	1.0	0.05	14.66	0.01	1.697	22.61	0.86	11.5	88.5	0.0	-3.94	0.49	0.68	—	4.3	0.003	0.76	0.0	0.04	14.30	0.00	2.503	10.74	0.00	9.1	90.9	0.0	-1.26	1.39	0.46	0.59	—	5179	675	2	0	0	0	0	logfile
✔	8UPT	42455	2025-02-10	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.006	0.72	0.0	0.04	27.67	0.01	2.087	17.90	0.00	0.0	0.0	0.0	—	1.00	0.28	0.88	—	1518	0	1	71	0	0	0	logfile
✘	8REV	19109	2025-02-12	2023-12-12	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7797	898	7	26	2	0	0	logfile
✔	8TPN	41478	2025-02-13	2023-08-04	4.07	4.04	4.01	4.0	0.002	0.46	0.0	0.04	15.10	0.00	2.220	5.18	0.00	2.8	97.2	0.0	2.66	0.74	0.81	—	4.0	0.003	0.55	0.0	0.04	15.13	0.00	2.287	5.30	0.11	2.6	97.4	0.0	2.02	0.34	0.75	0.82	—	8612	1102	4	0	4	0	0	logfile
✔	8JTS	36651	2025-02-10	2023-06-22	4.14	4.41	3.90	4.4	0.008	0.93	0.0	0.05	14.11	0.02	2.249	8.90	0.31	5.0	95.0	0.0	-0.32	0.53	0.67	—	4.4	0.003	0.69	0.0	0.04	14.24	0.00	2.485	8.59	0.00	5.0	95.0	0.0	1.10	1.15	0.54	0.67	—	3330	461	2	0	1	0	0	logfile
✔	8U1D	41810	2025-02-11	2023-08-31	4.25	4.46	4.28	4.4	0.006	1.05	0.0	0.06	13.61	0.01	2.280	9.04	0.52	7.9	91.7	0.3	-2.32	0.68	0.73	—	4.4	0.003	0.66	0.0	0.04	13.23	0.00	2.530	7.65	0.00	4.8	95.0	0.2	-1.32	1.63	0.71	0.75	—	5109	650	4	0	1	0	0	logfile
✔	9FGS	50420	2025-02-10	2024-05-25	4.0	4.27	4.01	4.2	0.003	0.66	0.0	0.04	13.38	0.00	2.251	10.57	0.00	8.7	91.3	0.0	-1.99	0.78	0.80	—	4.2	0.003	0.66	0.0	0.04	15.42	0.00	2.413	9.77	3.51	8.7	91.1	0.2	-1.76	0.98	0.78	0.81	—	3187	412	3	0	1	0	0	logfile
✔	8GEi	29971	2025-02-11	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.003	0.53	0.0	0.04	9.30	0.00	2.601	4.89	0.00	4.0	96.0	0.0	0.94	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile

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