Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MQY	48544	2025-02-11	2025-01-06	3.0	3.64	3.05	3.5	0.007	0.75	0.0	0.05	12.52	0.01	2.375	0.79	0.67	2.6	97.4	0.0	-1.16	0.76	0.87	6.11	3.5	0.003	0.57	0.0	0.04	13.43	0.00	2.551	2.43	2.17	1.3	98.7	0.0	0.96	1.34	0.73	0.86	5.46	6448	894	4	0	2	0	0	logfile
✔	9MMV	48404	2025-02-11	2024-12-20	3.79	2.98	3.76	1.4	0.004	0.81	0.0	0.05	15.10	0.01	1.340	10.87	1.08	3.4	96.2	0.4	1.43	0.89	0.84	2.37	1.5	0.005	0.70	0.0	0.04	15.12	0.00	2.507	6.82	4.85	5.0	94.9	0.1	0.78	0.60	0.90	0.84	2.14	4968	837	4	0	0	0	0	logfile
✔	9L1S	62753	2025-02-12	2024-12-15	3.0	3.20	3.20	3.2	0.003	0.66	0.0	0.04	14.05	0.01	1.945	9.32	0.24	6.6	93.4	0.0	-2.12	0.71	0.75	2.11	3.2	0.005	0.77	0.0	0.05	16.76	0.01	2.421	10.26	2.82	8.1	91.9	0.0	-1.41	0.61	0.73	0.79	2.33	7584	989	3	0	0	0	0	logfile
✔	9KQE	62501	2025-02-10	2024-11-25	3.0	3.27	3.05	3.2	0.008	0.87	0.0	0.05	13.46	0.01	2.237	9.43	1.68	3.3	96.7	0.0	-2.23	0.53	0.78	2.13	3.2	0.003	0.81	0.0	0.04	16.88	0.00	2.609	11.00	3.36	1.6	98.4	0.0	1.57	1.47	0.55	0.80	1.15	2795	373	2	0	1	0	0	logfile
✔	9KQA	62498	2025-02-10	2024-11-25	3.28	3.78	3.25	3.7	0.005	0.79	0.0	0.04	17.32	0.01	2.211	11.22	0.35	5.7	94.3	0.0	-2.72	0.46	0.72	1.02	3.7	0.003	0.73	0.0	0.04	17.65	0.00	2.481	6.94	2.80	3.5	96.5	0.0	1.55	0.55	0.47	0.73	0.74	2783	377	2	0	1	0	0	logfile
✔	9KoM	62478	2025-02-10	2024-11-20	3.2	3.48	3.38	3.5	0.004	0.79	0.0	0.04	17.93	0.00	2.245	6.15	0.81	4.6	95.4	0.0	0.32	0.26	0.66	1.35	3.5	0.003	0.56	0.0	0.04	18.55	0.00	2.624	4.17	6.45	3.2	96.8	0.0	1.58	1.24	0.39	0.83	0.94	2268	291	1	0	0	0	0	logfile
✔	9K27	61992	2025-02-13	2024-10-17	2.68	3.81	3.16	3.6	0.004	0.68	0.0	0.04	13.89	0.00	1.835	9.30	0.10	6.3	93.7	0.0	-0.54	0.75	0.86	2.98	3.6	0.003	0.75	0.0	0.04	16.27	0.00	2.496	7.40	1.49	6.1	93.9	0.0	0.14	1.25	0.67	0.81	2.63	9213	1167	7	0	1	0	0	logfile
✔	9K26	61991	2025-02-13	2024-10-17	3.0	3.96	3.34	3.9	0.004	0.71	0.0	0.05	13.77	0.00	1.994	11.88	0.72	7.9	92.0	0.1	-1.03	0.64	0.64	0.07	3.8	0.004	0.89	0.0	0.04	17.01	0.00	2.328	10.31	4.55	6.9	93.1	0.0	-0.77	1.55	0.65	0.77	1.89	8967	1147	7	0	1	0	0	logfile
✔	9K1D	61972	2025-02-12	2024-10-16	3.34	3.51	3.17	3.5	0.020	0.72	0.0	0.07	16.97	0.00	2.183	12.57	0.27	2.5	97.5	0.0	0.87	0.69	0.81	0.92	3.5	0.003	0.66	0.0	0.04	16.75	0.00	2.420	7.36	4.23	3.1	96.9	0.0	0.65	0.42	0.71	0.85	1.47	6892	858	5	0	6	0	0	logfile
✔	9K1C	61971	2025-02-11	2024-10-16	3.2	3.44	3.16	3.5	0.002	0.92	0.0	0.04	13.74	0.00	2.213	5.89	0.00	2.2	97.8	0.0	2.36	0.64	0.76	2.57	3.5	0.004	0.60	0.0	0.04	15.46	0.00	2.410	6.34	2.36	3.0	97.0	0.0	1.55	0.42	0.60	0.79	2.44	6611	871	5	0	1	0	0	logfile
✘	9JUB	61826	2025-02-11	2024-10-07	3.1	3.29	3.10	3.4	0.007	0.79	1.0	0.06	11.95	0.01	1.934	17.05	0.56	7.6	92.3	0.1	-1.75	0.55	0.67	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6479	829	5	0	5	0	0	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	9JSW	61785	2025-02-11	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.63	0.0	0.05	13.96	0.01	2.490	0.23	0.46	4.5	95.5	0.0	-1.91	1.48	0.45	0.90	7.25	4304	280	8	0	0	0	2128	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	9JSU	61783	2025-02-11	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.55	0.0	0.05	13.91	0.00	2.696	1.25	0.00	2.8	97.2	0.0	-3.10	1.17	0.52	0.92	8.57	4040	264	8	0	0	0	2000	logfile
✔	9JST	61782	2025-02-11	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	9JS4	61766	2025-02-10	2024-09-30	3.8	3.94	3.72	3.9	0.002	0.62	0.0	0.04	12.56	0.01	2.286	6.45	0.00	4.6	95.4	0.0	-1.81	0.59	0.71	2.33	3.9	0.003	0.67	0.0	0.04	14.94	0.00	2.481	6.92	2.82	5.6	94.4	0.0	-1.84	0.33	0.60	0.72	2.20	3244	417	3	0	0	0	0	logfile
✔	9JR3	61747	2025-02-13	2024-09-29	2.8	2.91	—	2.9	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	2.9	0.003	0.61	0.0	0.04	15.64	0.00	2.514	7.37	3.64	2.8	97.1	0.1	0.91	0.90	0.49	0.76	2.30	9455	1228	9	0	3	1	0	logfile
✔	9JR2	61746	2025-02-13	2024-09-29	2.8	2.91	—	3.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	2.9	0.006	0.67	0.0	0.04	15.81	0.00	2.505	8.05	3.43	4.3	95.7	0.0	0.77	0.64	0.50	0.77	2.62	9418	1225	8	0	1	1	0	logfile
✔	9JQT	61741	2025-02-11	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.0	0.004	0.57	0.0	0.04	15.04	0.00	2.610	7.11	3.15	2.1	97.9	0.0	0.70	0.31	0.55	0.79	3.34	5669	720	4	0	0	0	0	logfile

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