Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6K42	9912	2025-02-13	2019-05-23	4.1	4.04	—	4.1	0.005	0.82	0.0	0.05	9.24	0.01	2.288	4.50	0.31	5.4	94.6	0.0	-4.37	0.60	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8816	1116	6	0	1	0	0	logfile
✔	6K41	9911	2025-02-12	2019-05-23	2.9	2.88	—	2.9	0.009	1.07	0.0	0.06	10.21	0.01	2.166	3.99	0.44	5.1	94.9	0.0	-2.62	0.73	0.85	4.09	2.9	0.003	0.62	0.0	0.04	15.00	0.00	2.489	5.60	3.29	3.5	96.5	0.0	0.69	0.63	0.75	0.84	3.58	8430	1077	6	0	1	0	0	logfile
✔	6JXR	9895	2025-02-12	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.003	0.73	0.0	0.04	15.83	0.00	2.500	10.37	3.93	6.1	93.9	0.0	-0.19	1.71	0.66	0.79	2.13	8437	1073	8	0	0	0	0	logfile
✔	6JT2	9885	2025-02-13	2019-04-08	3.8	3.88	—	3.8	0.004	0.74	0.0	0.04	11.36	0.01	1.980	10.08	3.54	4.0	95.7	0.3	-2.54	0.80	0.80	2.23	3.8	0.006	1.17	2.0	0.06	13.92	0.01	1.393	10.34	3.78	3.4	96.6	0.0	0.38	1.65	0.82	0.82	1.12	8191	1075	4	0	4	0	0	logfile
✔	6JT1	9884	2025-02-13	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.33	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.005	0.83	0.0	0.04	14.53	0.00	2.279	9.99	3.63	4.9	95.0	0.1	-0.10	1.26	0.81	0.83	1.61	8602	1118	3	0	1	0	0	logfile
✔	6JT0	9883	2025-02-13	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.03	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.003	0.84	0.0	0.04	13.88	0.00	2.539	11.22	2.75	3.8	96.1	0.1	0.43	1.27	0.86	0.82	—	8602	1118	3	0	1	0	0	logfile
✔	6JNF	9851	2025-02-12	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.48	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.88	0.0	0.05	18.30	0.00	2.473	7.51	3.07	10.0	90.0	0.0	-2.12	1.46	0.67	0.82	1.12	7271	924	11	0	1	0	0	logfile
✔	6JMR	9850	2025-02-14	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.06	0.0	0.06	14.10	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.05	0.83	0.78	—	4.1	0.003	0.73	0.0	0.04	13.28	0.01	2.459	9.75	0.00	5.7	94.3	0.0	-1.96	0.79	0.83	0.78	—	9809	1223	12	0	69	0	0	logfile
✔	6JMQ	9849	2025-02-14	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	14.03	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.03	0.71	0.79	2.84	3.5	0.003	0.69	0.0	0.04	14.76	0.00	2.495	7.53	3.27	3.8	96.2	0.1	-1.15	0.51	0.75	0.83	2.66	9950	1223	12	0	74	0	0	logfile
✔	6JND	9848	2025-02-10	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.003	0.62	0.0	0.04	16.09	0.00	2.520	5.00	2.35	3.4	96.6	0.0	-0.90	1.25	0.48	0.87	1.95	3294	419	2	0	1	0	0	logfile
✔	6JNC	9847	2025-02-10	2019-03-14	3.7	3.76	—	3.8	0.009	0.87	0.0	0.05	14.72	0.01	2.304	3.18	9.09	4.8	95.2	0.0	-5.69	0.46	0.78	1.61	3.8	0.002	0.58	0.0	0.04	15.94	0.00	2.572	3.94	2.05	3.6	96.4	0.0	-0.89	0.84	0.51	0.87	2.25	3294	419	2	0	1	0	0	logfile
✔	6JC3	9793	2025-02-11	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	16.29	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.003	0.67	0.0	0.04	14.43	0.00	2.590	7.69	0.00	4.1	95.9	0.0	0.81	4.20	0.42	0.80	—	3154	391	2	6	0	0	0	logfile
✘	6JBJ	9791	2025-02-13	2019-01-25	3.6	3.75	—	3.7	0.008	1.04	0.0	0.06	16.77	0.01	2.206	10.64	0.00	9.1	90.9	0.0	-6.19	0.65	0.83	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9166	1130	4	0	2	0	0	logfile
✔	6JBH	9790	2025-02-13	2019-01-25	3.94	4.06	—	4.0	0.007	1.23	0.0	0.07	12.50	0.03	2.260	6.09	0.53	14.3	85.5	0.2	-5.84	0.68	0.81	2.48	4.0	0.004	0.97	0.0	0.05	16.22	0.00	2.359	11.61	3.09	14.5	85.5	0.0	-2.61	1.63	0.68	0.82	1.91	8592	1062	4	0	0	0	0	logfile
✔	6iZV	9758	2025-02-11	2018-12-20	4.2	4.27	—	4.2	0.005	0.90	0.0	0.05	10.55	0.01	2.170	5.77	0.00	4.9	95.1	0.0	-3.60	0.68	0.81	—	4.2	0.003	0.70	0.0	0.05	12.72	0.00	1.957	9.77	0.00	5.9	94.1	0.0	-0.94	0.98	0.70	0.82	—	5624	698	4	0	4	0	0	logfile
✔	6iWW	9743	2025-02-14	2018-12-08	3.9	3.82	—	3.8	0.008	1.09	0.0	0.06	13.48	0.01	2.301	5.79	0.00	4.2	95.8	0.0	-4.19	0.63	0.81	2.15	3.8	0.003	0.76	0.0	0.04	15.49	0.01	2.440	13.93	1.92	3.3	96.7	0.0	0.75	1.51	0.64	0.82	1.11	10227	1386	9	0	3	0	0	logfile
✔	6iV6	9742	2025-02-14	2018-12-02	3.6	3.59	—	3.6	0.005	1.04	0.0	0.05	17.65	0.01	2.261	4.91	0.61	6.7	93.3	0.1	-5.17	0.64	0.75	2.10	3.6	0.003	0.69	0.0	0.04	19.03	0.00	2.526	6.79	3.83	7.3	92.7	0.0	-2.32	0.90	0.69	0.78	2.10	10158	1209	2	26	0	0	0	logfile
✔	6iRT	9722	2025-02-12	2018-11-14	3.5	3.76	—	3.7	0.012	1.23	0.0	0.09	14.32	0.01	2.241	10.46	3.01	9.2	90.0	0.8	-5.53	0.63	0.80	3.32	3.7	0.003	0.82	0.0	0.05	14.79	0.00	2.435	7.83	2.23	6.7	93.0	0.3	-1.18	0.90	0.65	0.81	2.17	7348	926	7	0	11	0	0	logfile
✔	6iRS	9721	2025-02-12	2018-11-14	3.3	3.44	—	3.4	0.011	1.36	0.0	0.07	14.19	0.01	2.150	13.11	3.66	8.8	90.3	0.9	-5.69	0.62	0.77	2.28	3.4	0.004	0.82	0.0	0.04	15.78	0.00	2.390	8.58	3.40	7.8	92.1	0.1	-1.06	0.91	0.64	0.80	1.67	7337	926	7	0	10	0	0	logfile
✔	5H1C	9567	2025-02-12	2016-10-08	4.5	4.34	—	3.8	0.009	1.30	0.0	0.05	15.37	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.004	0.70	0.0	0.04	15.40	0.00	1.888	13.04	0.00	4.6	94.5	1.0	-0.04	0.87	0.58	0.83	—	7602	933	8	18	6	0	0	logfile

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