Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NCJ	12268	2025-02-14	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.3	0.003	0.63	1.0	0.05	14.15	0.00	2.300	14.20	0.00	11.9	88.1	0.0	-3.12	1.73	0.70	0.59	—	10860	774	12	0	0	0	5586	logfile
✔	8Q8S	18259	2025-02-14	2023-08-18	2.68	2.07	2.67	2.3	0.011	2.11	3.0	0.10	9.52	0.01	2.513	0.47	0.00	7.2	92.8	0.0	-1.68	0.30	0.74	5.06	2.2	0.003	0.72	0.0	0.05	16.20	0.01	2.353	5.38	1.68	5.4	94.6	0.0	-3.10	1.84	0.31	0.79	4.73	10611	684	9	0	0	0	5409	logfile
✔	8S0T	19628	2025-02-14	2024-02-14	2.3	2.16	2.46	2.3	0.013	2.14	4.0	0.14	16.21	0.02	2.480	4.30	3.24	3.6	95.8	0.6	-2.68	0.56	0.73	4.61	2.5	0.004	0.65	0.0	0.04	16.77	0.00	2.446	7.43	0.90	2.8	97.1	0.2	0.25	1.05	0.57	0.75	3.61	10665	630	7	0	1	145	5404	logfile
✔	7NCA	12264	2025-02-14	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.003	0.54	0.0	0.05	13.27	0.00	2.558	0.96	1.55	4.9	95.1	0.0	-3.04	0.75	0.69	0.85	3.74	10428	732	12	0	0	0	5376	logfile
✔	7NCG	12265	2025-02-14	2021-01-28	3.43	3.45	3.16	3.6	0.012	2.20	0.0	0.08	10.99	0.01	2.685	0.58	0.00	7.8	92.2	0.0	-1.51	0.58	0.69	3.64	3.7	0.004	0.69	0.0	0.05	13.77	0.00	2.584	10.85	1.74	10.5	89.5	0.0	-2.81	1.43	0.60	0.73	3.31	10428	732	12	0	0	0	5376	logfile
✔	7QK5	14038	2025-02-14	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.002	0.56	0.0	0.05	17.92	0.00	2.572	1.62	1.37	3.9	96.1	0.0	-1.92	1.64	0.36	0.82	6.93	10485	666	18	0	36	0	5337	logfile
✔	7NKQ	12446	2025-02-14	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.002	0.51	0.0	0.04	15.83	0.00	2.363	4.80	0.52	2.1	97.9	0.0	1.94	0.32	0.82	0.84	2.49	10621	714	8	0	0	0	5312	logfile
✔	9BBL	44421	2025-02-14	2024-04-06	2.5	2.33	2.51	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	2.6	0.005	0.70	0.0	0.05	16.94	0.00	2.430	3.27	0.85	8.8	91.2	0.0	-3.01	2.35	0.39	0.83	5.45	10395	666	9	0	0	0	5301	logfile
✔	8E2H	27836	2025-02-14	2022-08-15	2.3	2.41	2.27	2.4	0.003	0.60	0.0	0.03	15.28	0.00	1.980	6.85	0.52	1.1	98.9	0.0	1.61	0.65	0.82	4.36	2.4	0.004	0.59	0.0	0.03	15.76	0.01	2.329	5.50	2.08	1.0	99.0	0.0	2.61	0.94	0.65	0.83	4.00	10412	656	2	0	0	40	5280	logfile
✔	7PMY	13544	2025-02-14	2021-09-04	3.8	4.01	3.76	3.9	0.002	0.46	0.0	0.04	9.15	0.00	2.008	5.14	1.40	2.0	97.9	0.2	0.55	0.66	0.79	2.91	3.9	0.003	0.55	0.0	0.04	12.68	0.00	2.482	5.72	1.93	3.2	96.8	0.0	0.88	0.75	0.65	0.79	2.08	10499	659	2	0	0	0	5276	logfile
✔	9BiA	44585	2025-02-14	2024-04-23	3.0	3.28	3.03	3.3	0.003	0.60	0.0	0.04	13.72	0.00	2.333	1.44	0.00	1.8	98.2	0.0	0.99	0.44	0.77	3.80	3.3	0.003	0.50	0.0	0.04	15.97	0.00	2.412	4.03	1.08	0.9	98.9	0.2	3.44	0.66	0.51	0.82	2.92	10430	672	6	0	0	0	5263	logfile
✔	8ZPB	60331	2025-02-14	2024-05-29	2.6	2.83	2.61	2.9	0.005	0.56	0.0	0.04	15.80	0.00	1.921	6.01	1.08	1.7	98.3	0.0	0.89	0.61	0.80	4.62	2.9	0.004	0.52	0.0	0.04	15.59	0.00	2.025	3.85	1.61	1.8	98.2	0.0	1.47	1.34	0.60	0.80	4.76	10676	667	4	0	5	54	5257	logfile
✔	7PMX	13543	2025-02-14	2021-09-03	3.5	3.85	3.50	3.7	0.003	0.54	0.0	0.04	10.52	0.00	2.134	6.34	2.13	3.2	96.8	0.0	0.60	0.61	0.80	1.97	3.7	0.003	0.57	0.0	0.04	13.13	0.00	2.303	4.71	1.95	3.1	96.9	0.0	1.06	0.97	0.61	0.79	1.47	10417	659	2	0	0	0	5253	logfile
✔	7PN1	13545	2025-02-14	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.002	0.55	0.0	0.04	14.74	0.00	2.414	4.91	0.71	2.6	97.4	0.0	1.44	0.98	0.60	0.80	0.89	10384	657	1	0	0	0	5237	logfile
✔	8Q9L	18285	2025-02-14	2023-08-20	2.76	2.36	2.64	2.6	0.011	1.76	0.0	0.09	11.63	0.01	2.537	0.00	0.00	1.6	98.4	0.0	-1.68	0.29	0.76	6.43	2.6	0.005	0.60	0.0	0.05	18.22	0.00	2.436	1.27	1.56	1.4	98.6	0.0	-2.29	1.47	0.37	0.86	6.88	10233	657	9	0	0	0	5220	logfile
✔	7UZS	26917	2025-02-14	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.53	0.0	0.04	17.89	0.00	2.443	2.22	1.25	1.2	98.8	0.0	1.38	0.33	0.64	0.87	6.39	10550	658	2	0	0	193	5183	logfile
✔	6oFJ	20047	2025-02-14	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.003	0.62	0.0	0.04	13.93	0.01	2.028	10.58	0.00	9.4	90.6	0.0	-2.54	1.29	0.57	0.56	—	10310	650	2	0	0	0	5142	logfile
✔	8Q7T	18233	2025-02-14	2023-08-17	3.0	2.38	2.99	3.1	0.011	1.80	0.0	0.09	12.35	0.01	2.480	0.10	0.18	2.4	97.6	0.0	-1.65	0.27	0.65	4.83	2.9	0.003	0.59	0.0	0.05	16.97	0.00	2.367	4.47	2.65	2.4	97.6	0.0	-1.83	1.95	0.33	0.82	4.65	10083	654	9	0	0	0	5136	logfile
✔	7PMW	13542	2025-02-14	2021-09-03	4.1	4.24	4.05	4.1	0.002	0.47	1.0	0.04	9.25	0.00	2.047	8.47	0.91	2.8	97.2	0.0	0.56	0.58	0.75	—	4.1	0.005	0.62	0.0	0.04	11.79	0.00	2.328	8.47	0.00	5.2	94.8	0.0	0.10	1.20	0.59	0.77	—	10153	643	2	0	0	0	5123	logfile
✔	8DS6	27684	2025-02-14	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.003	0.57	0.0	0.04	11.53	0.01	2.437	6.02	0.00	2.4	97.6	0.0	2.13	1.09	0.85	0.64	—	10135	669	2	0	0	0	5107	logfile

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