Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BCV	44440	2025-02-12	2024-04-09	3.2	3.43	3.23	3.4	0.003	0.86	0.0	0.04	15.57	0.00	1.994	2.45	0.64	1.9	98.1	0.0	-0.32	0.64	0.79	2.82	3.4	0.002	0.61	0.0	0.03	14.87	0.00	2.028	2.02	6.11	1.7	98.3	0.0	-0.28	0.25	0.64	0.79	3.21	7729	422	12	0	907	0	0	logfile
✔	8GZ3	34389	2025-02-13	2022-09-24	3.3	3.13	—	3.1	0.012	1.45	3.0	0.10	15.00	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.003	0.60	0.0	0.04	14.12	0.00	2.384	4.37	1.11	1.3	98.7	0.0	0.79	1.19	0.71	0.83	3.23	8542	789	7	0	434	1	0	logfile
✔	7F4U	31454	2025-02-12	2021-06-21	4.2	3.10	—	3.0	0.004	0.87	0.0	0.04	14.59	0.01	2.087	18.07	0.00	14.4	85.1	0.6	-5.17	0.65	0.58	—	2.4	0.004	0.84	0.0	0.04	13.64	0.01	2.392	12.89	0.17	13.7	86.3	0.0	-1.38	0.68	0.71	0.72	—	8079	904	4	0	323	0	0	logfile
✔	8EQU	28546	2025-02-11	2022-10-09	2.8	3.03	2.80	3.0	0.004	0.79	0.0	0.04	14.51	0.00	2.025	8.25	0.00	1.9	98.1	0.0	-0.12	0.64	0.76	2.12	3.0	0.003	0.59	0.0	0.03	14.95	0.00	2.584	4.86	1.40	1.5	98.5	0.0	0.96	1.04	0.68	0.82	1.83	5764	542	10	0	318	0	0	logfile
✔	8VCV	43141	2025-02-14	2023-12-14	2.8	3.10	2.90	3.1	0.006	0.93	0.0	0.05	15.78	0.01	2.095	3.17	0.00	2.5	97.5	0.0	-0.59	0.62	0.86	6.05	3.1	0.003	0.60	0.0	0.04	13.34	0.00	2.436	4.91	2.58	1.9	98.1	0.0	0.39	0.36	0.59	0.87	5.04	10466	1035	38	0	311	0	0	logfile
✔	8TYC	41713	2025-02-14	2023-08-24	3.3	3.96	3.46	3.7	0.021	1.75	0.0	0.15	16.24	0.02	2.365	2.90	0.00	3.1	96.9	0.0	0.44	0.75	0.78	2.83	3.7	0.005	0.93	0.0	0.05	13.99	0.00	2.199	9.42	2.21	3.4	96.6	0.0	0.48	1.67	0.74	0.82	2.82	10628	1058	39	0	295	0	0	logfile
✔	8VE8	43168	2025-02-14	2023-12-18	2.8	2.99	2.78	3.0	0.006	0.92	0.0	0.05	13.86	0.01	2.184	2.27	0.00	2.9	97.1	0.0	-0.04	0.63	0.87	6.08	3.0	0.003	0.58	0.0	0.04	13.58	0.00	2.520	3.57	2.69	1.9	98.1	0.0	0.39	1.65	0.62	0.88	5.15	10327	1035	34	0	294	0	0	logfile
✔	9CK7	45643	2025-02-14	2024-07-08	3.45	3.77	3.60	3.8	0.005	0.96	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.005	1.08	2.0	0.04	14.25	0.01	2.291	9.23	3.85	4.8	95.2	0.0	-0.61	0.87	0.67	0.80	2.79	10026	1001	32	0	292	0	0	logfile
✔	9CK8	45644	2025-02-14	2024-07-08	3.04	3.30	3.16	3.3	0.005	0.89	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.005	0.66	0.0	0.05	13.62	0.00	2.474	4.61	2.11	2.9	97.1	0.0	-0.15	0.83	0.64	0.84	4.52	9966	1001	30	0	283	0	0	logfile
✔	8TYE	41715	2025-02-14	2023-08-25	3.8	4.08	3.83	4.0	0.006	1.02	0.0	0.06	16.15	0.02	2.202	5.86	0.00	3.7	96.3	0.0	-1.26	0.70	0.76	2.53	4.0	0.004	0.84	0.0	0.05	15.32	0.00	2.443	11.39	2.00	4.9	95.0	0.1	-0.70	0.57	0.72	0.79	2.34	9921	994	33	0	279	0	0	logfile
✔	9CJ8	45625	2025-02-14	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.08	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.004	0.85	0.0	0.05	16.06	0.00	2.414	13.63	3.44	4.4	95.6	0.0	-0.91	0.58	0.67	0.79	1.63	9750	989	22	0	269	0	0	logfile
✔	6J5A	0670	2025-02-12	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.82	0.0	0.04	13.00	0.00	2.538	10.27	0.00	7.4	92.6	0.0	-1.64	1.23	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	8RZL	19608	2025-02-13	2024-02-12	2.65	3.69	2.75	3.2	0.012	1.57	0.0	0.10	15.37	0.01	2.347	1.93	3.21	5.0	95.0	0.0	0.97	0.89	0.92	6.37	3.2	0.003	0.66	0.0	0.04	11.36	0.00	2.493	3.57	2.18	2.7	97.3	0.0	1.24	0.47	0.87	0.90	5.10	8895	915	35	0	155	0	0	logfile
✔	7WFG	32465	2025-02-14	2021-12-26	4.33	4.89	—	4.3	0.006	1.01	1.0	0.06	11.46	0.01	2.204	8.95	1.08	12.3	87.5	0.2	-5.06	0.68	0.68	—	4.3	0.003	0.76	0.0	0.05	12.93	0.00	2.354	14.10	0.36	9.7	90.2	0.1	-2.52	1.55	0.70	0.74	—	9836	1246	11	0	125	0	0	logfile
✔	6NY2	8996	2025-02-14	2019-02-10	3.2	3.56	—	3.4	0.007	1.02	0.0	0.05	22.80	0.01	2.266	6.07	0.66	15.6	83.6	0.8	-4.66	0.78	0.83	2.12	3.4	0.003	0.69	0.0	0.04	23.06	0.00	2.386	9.53	2.80	15.9	84.1	0.0	-1.35	0.46	0.77	0.83	1.55	10538	794	6	180	121	0	0	logfile
✔	6NY1	8994	2025-02-14	2019-02-10	4.2	4.56	—	4.3	0.007	1.11	0.0	0.06	23.73	0.01	2.099	9.52	0.33	18.6	81.0	0.4	-4.83	0.80	0.80	—	4.4	0.003	0.69	0.0	0.04	22.35	0.00	2.105	12.22	0.00	15.2	84.8	0.0	-1.98	0.58	0.79	0.77	—	9911	783	6	154	121	0	0	logfile
✔	6NY3	8980	2025-02-14	2019-02-10	3.7	4.08	—	4.0	0.009	1.13	0.0	0.06	22.55	0.01	2.251	4.71	0.33	16.9	82.5	0.6	-5.86	0.76	0.84	1.41	4.0	0.003	0.64	0.0	0.03	22.44	0.00	2.269	7.28	3.29	14.5	85.4	0.1	-1.51	1.04	0.66	0.80	1.02	10214	794	6	164	121	0	0	logfile
✔	6o84	0650	2025-02-11	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.002	0.66	0.0	0.03	16.14	0.00	2.583	7.42	2.40	4.6	95.4	0.0	1.37	1.25	0.59	0.81	2.14	6224	712	4	0	118	0	0	logfile
✔	8E2J	27838	2025-02-11	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.52	0.0	0.03	17.70	0.00	2.278	10.44	2.03	0.9	99.1	0.0	3.96	1.69	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✘	8BQV	16188	2025-02-12	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile

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