Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9Y	24264	2025-02-12	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.3	0.004	1.22	0.0	0.00	6.48	0.00	2.505	15.16	0.00	26.4	73.1	0.5	-4.83	3.35	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7N95	24250	2025-02-12	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.006	1.29	0.0	0.00	6.65	0.00	2.440	11.36	0.00	21.0	78.7	0.2	-3.63	2.26	0.85	0.84	—	7299	2433	2	0	0	0	0	logfile
✔	7N9Q	24259	2025-02-12	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.6	0.006	1.47	0.0	0.00	7.94	0.00	2.432	35.79	0.00	28.5	70.6	1.0	-4.70	2.66	0.86	0.82	—	6945	2315	1	0	0	0	0	logfile
✔	6U68	20662	2025-02-14	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.73	0.0	0.05	4.11	0.00	2.500	2.29	0.00	8.5	91.5	0.0	-0.36	1.79	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✘	6UXA	20931	2025-02-14	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	6UXB	20932	2025-02-14	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✘	8DXQ	27773	2025-02-14	2022-08-02	3.8	4.02	3.81	3.9	0.002	0.52	0.0	0.04	4.66	0.00	2.301	1.14	0.00	10.1	89.9	0.0	0.26	0.65	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10435	2101	7	0	0	0	0	logfile
✔	8DXR	27774	2025-02-14	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.004	0.66	0.0	0.04	5.02	0.00	2.529	0.13	0.00	13.0	86.9	0.1	0.32	0.35	0.68	0.72	—	10435	2101	7	0	0	0	0	logfile
✔	6TNG	10532	2025-02-12	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.004	0.84	0.0	0.00	5.93	0.00	2.481	2.31	0.00	18.1	81.8	0.1	-2.28	0.37	0.76	0.71	—	8240	2060	2	0	0	0	0	logfile
✔	6oR5	9032	2025-02-14	2019-04-29	4.0	4.23	—	3.9	0.008	1.12	0.0	0.05	15.95	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.003	0.66	0.0	0.04	10.21	0.00	2.507	1.21	0.00	16.9	83.1	0.0	-2.12	1.36	0.78	0.80	—	10364	2058	2	0	5	0	0	logfile
✔	7JSH	22454	2025-02-12	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.007	1.51	0.0	0.06	14.49	0.01	2.198	18.51	0.00	30.2	69.4	0.4	-5.64	6.11	0.72	0.66	—	7916	1904	8	15	0	0	0	logfile
✔	8YY1	39663	2025-02-13	2024-04-03	3.6	3.97	3.61	3.5	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.60	0.0	0.04	4.46	0.01	2.593	1.77	0.00	5.3	94.7	0.0	2.41	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	8URE	42491	2025-02-13	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	6YW7	10960	2025-02-11	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.002	0.85	0.0	0.02	5.56	0.00	2.562	8.29	0.00	8.7	91.1	0.2	-1.68	4.73	0.80	0.64	—	5426	1788	9	0	2	0	0	logfile
✔	6AYG	7020	2025-02-14	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	19.94	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.003	0.60	0.0	0.04	10.48	0.00	2.541	1.20	0.00	4.6	95.4	0.0	1.19	0.84	0.84	0.79	—	10456	1756	4	0	0	0	0	logfile
✘	6ZD0	11172	2025-02-12	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7962	1611	6	0	0	0	0	logfile
✔	9CD9	45464	2025-02-14	2024-06-24	3.2	3.12	3.07	3.3	0.006	0.53	0.0	0.05	15.89	0.00	2.295	9.25	1.10	1.4	98.6	0.0	-3.04	0.72	0.90	5.83	3.3	0.003	0.51	0.0	0.05	16.94	0.00	2.615	4.00	2.11	1.5	98.5	0.0	-3.06	0.43	0.66	0.90	5.59	10989	1606	22	0	0	0	0	logfile
✔	9C58	45207	2025-02-12	2024-06-06	4.7	4.87	4.69	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.005	0.76	0.0	0.04	6.86	0.00	1.906	3.11	0.00	8.4	91.6	0.0	-1.17	1.56	0.76	0.73	—	7954	1590	6	0	2	0	0	logfile
✔	8FTK	29439	2025-02-12	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.004	0.60	0.0	0.04	4.95	0.00	2.287	2.98	0.00	8.8	91.2	0.0	-0.04	1.28	0.86	0.83	—	7840	1584	1	0	0	0	0	logfile
✔	7DTW	30856	2025-02-14	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.83	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.56	0.0	0.04	12.14	0.00	2.029	5.51	0.00	6.3	93.6	0.1	-0.94	1.22	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile

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